Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3143 ATGTTGGATCTCAATGTCGAAATGGAAGGTTCTCAGCCCCAAATGGAAGAAGACTCGGGAACTTCCAACTCCTCTGTGCTGAATTTCGAAGAATCTCGAGACGAAGATTCTTCTGCCTTCGTATTCGACATACTGAAGAAAGAAACAGATTGTCGAATTGAGGATGAAGATAAGGAGACACCGGAAATCACGACACAGCTACTTTTCCCGGTGAATGATAGTGACGACAAGGGACGCAGAGACTGTGATTTCCGATTGGGATTATCATGTTCGAGAAGTCATCAATCCTTCGCTGGGAGTGGTGTTGCTAACACGCAAGGTGAATTGCGAGTGTTGCAGGAAAAGCAACCTCAAATCAGGAAAAGCAGAAGAGGGCCCAGGTCCCGAAGCTCACAGTACAGGGGTGTTACTTTCTATCGCAGGACTGGTCGCTGGGAATCTCATATATGGGATTGTGGGAAGCAGGTCTATTTAGGTGGATTTGATACTGCAGATACTGCAGCAAGAGCATATGATAGAGCTGCAATTAAGTTCAGAGGTGTTGATGCTGATATAAACTTCAATCTGAGTGATTATGAGGAAGACATGAAGATGATGAAAGATTTGAGTAAAGAGGAGTTTATCCAAGTCCTTCGCCGCCAATGCTCTGGTATCCCAAGAGGGAGCTCAAAATATAGAGGTCTGTCTCTCAACAAATGGGGTCAGTGGGAAGCACAAACCAGCCCTTTCCTTGGCAAAAAGCTTTACGACAAGCTACCCATCAAGAGTGGCGGAAGAGGATTGGTGACTAGCTTTGAGCCTAGCAAGGGAGAGAGAACTATTGAGTCAAGCAGAGGAGGTAATTATCAAAATCTTGATTTGAGCCTTGGAATTTCTCCACCTTGTAATGAATCCAAGAAGAATGATGCTGCAAGAGGCTTTTCTTTTCGTTACACAGCTTGTGAGCCACCCAACAAAGGAGGGCCAATGGCAGATGGCACTGGTGCTGCATTAATAAGGGGACAAGCCATTTATGGAGTGGCAATGCCATCCAAATATGACCAAATATGCTCTGGCTTATACAATGGTTATGTCCAGGACTTTGAGGAGAAGGCCATAGATAAGAGAACAGAAGTTGTTCCCTTATCAAGATTCCCAAGTCTGGCCTGGCAACTTCACAGCAACGGCAGCATCACGCCGGTGCCGGTGTTTTCTAATTCAAATGCAGCATCATCAAAATTCATTTCTTCTAGCAACAACAACAATGGTGGATCATCAGCCCCACATCATCCAATAATCAACCCTCATCATCATCATCATAACAATTCCATCTACAATTTGTGCTTCAGTTCAACCCCAACTTCCACACTTAATAACTCCCCAAGTTGCCAAAGTCTTAGCAGCTGA 1386 0.4473 MLDLNVEMEGSQPQMEEDSGTSNSSVLNFEESRDEDSSAFVFDILKKETDCRIEDEDKETPEITTQLLFPVNDSDDKGRRDCDFRLGLSCSRSHQSFAGSGVANTQGELRVLQEKQPQIRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTADTAARAYDRAAIKFRGVDADINFNLSDYEEDMKMMKDLSKEEFIQVLRRQCSGIPRGSSKYRGLSLNKWGQWEAQTSPFLGKKLYDKLPIKSGGRGLVTSFEPSKGERTIESSRGGNYQNLDLSLGISPPCNESKKNDAARGFSFRYTACEPPNKGGPMADGTGAALIRGQAIYGVAMPSKYDQICSGLYNGYVQDFEEKAIDKRTEVVPLSRFPSLAWQLHSNGSITPVPVFSNSNAASSKFISSSNNNNGGSSAPHHPIINPHHHHHNNSIYNLCFSSTPTSTLNNSPSCQSLSS 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3143 461 SMART rav1_2 132 194 IPR001471 GO:0003700|GO:0006355
Alju01g3143 461 CDD AP2 132 190 IPR001471 GO:0003700|GO:0006355
Alju01g3143 461 Pfam AP2 domain 132 180 IPR001471 GO:0003700|GO:0006355
Alju01g3143 461 SUPERFAMILY DNA-binding domain 131 189 IPR016177 GO:0003677
Alju01g3143 461 MobiDBLite consensus disorder prediction 113 132 - -
Alju01g3143 461 MobiDBLite consensus disorder prediction 1 34 - -
Alju01g3143 461 FunFam AP2-like ethylene-responsive transcription factor 131 190 - -
Alju01g3143 461 ProSiteProfiles AP2/ERF domain profile. 132 188 IPR001471 GO:0003700|GO:0006355
Alju01g3143 461 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 93 300 - -
Alju01g3143 461 MobiDBLite consensus disorder prediction 408 429 - -
Alju01g3143 461 Gene3D AP2/ERF domain 131 189 IPR036955 GO:0003700|GO:0006355
Alju01g3143 461 MobiDBLite consensus disorder prediction 12 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3143 Alju-ChrAlju01 55946530 55949885 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3143 1 424 AP2-EREBP Transcription Factor Family AT5G60120 40.257 1.16e-66 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g3143 AP2 7.6e-10 CL0081