Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3136 ATGGCATCTCCTCATATTACATTCTTGGAAGACTTGATCGAAGAAGATACATCTCCTCCTGGTTCGAATTTAGAAGACATAATCGAAGAAGATAGCTTTCATATCAGATTCACTGTTGAAGAACATGGGAGCACGGGGAGTTCTCCTGATGATACAGAAAATCTTTTAATGATAGAAACTTTTGATGTGCTTGAATCTCCTTTCATTATACCTTGCAGCGAAGTACTCCAAAACGTTCCAGATTTTCTTCATAACACAGCATCTGACTACCTTTCCGAAAGAGACATACAATCTTTGGCTTCCGAAATCACATCGTATTATCAAGAAAGAGTCCAATATACTACTGGTGAAACTACTCGTTATCGCTTAATACCATTAAATGTGCATTTTTATGTTGATTCTGCGTTTGGTCAATATGCACCACTATTTTACACCCTTCAACGACCCTCTCTATATGAAGACCATCAAGATATGATAGATAATATTAGTGATGATTCAGAGTTAACAGAAATCTTTGAGGCCATAGATCAATCTATGCAACAATTGTCTTTGATTCCAGCATCTGAAGAAGCTATGGCATCACTAAAGAAAATAAAAATTCCTCATGAAGAAATTAATGCAGACATATGCAGTATTTGCTTAGAAAATTTTGATGATGATGATGCCGATGTTTCAGCAACACCATGTGACCATGTTTATCACAATATTTGTATTGTAAAATGGCTGAAAACAAGTCATACATGTCCATTGTGTCGCTACCAAATGTCTACCATATAA 777 0.3578 MASPHITFLEDLIEEDTSPPGSNLEDIIEEDSFHIRFTVEEHGSTGSSPDDTENLLMIETFDVLESPFIIPCSEVLQNVPDFLHNTASDYLSERDIQSLASEITSYYQERVQYTTGETTRYRLIPLNVHFYVDSAFGQYAPLFYTLQRPSLYEDHQDMIDNISDDSELTEIFEAIDQSMQQLSLIPASEEAMASLKKIKIPHEEINADICSICLENFDDDDADVSATPCDHVYHNICIVKWLKTSHTCPLCRYQMSTI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3136 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 257 IPR013083 -
Alju01g3136 258 SMART ring_2 210 251 IPR001841 -
Alju01g3136 258 SMART ringv_2 209 252 IPR011016 GO:0008270
Alju01g3136 258 ProSiteProfiles Zinc finger RING-type profile. 210 252 IPR001841 -
Alju01g3136 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 140 255 - -
Alju01g3136 258 Pfam Ring finger domain 209 252 IPR001841 -
Alju01g3136 258 CDD RING-H2_PA-TM-RING 210 252 - -
Alju01g3136 258 SUPERFAMILY RING/U-box 196 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3136 Alju-ChrAlju01 55727152 55727928 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3136 170 255 C3H Transcription Factor Family AT1G18760 33.708 1.46e-12 63.5