Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3112 ATGGAGATAAAGGACTGGACTTCAGCTATTTTCCGGTTGGCCGTGATAGTTTATTCAGTATGGATGATTTCTGCTAACATGGAAGGCGATGCTTTGCACAGCCTGAGGACAAATTTGCAGGATCCTAACAATGTTTTGTCAAGTTGGGATCCTACACTTGTCAATCCATGCACATGGTTTCATGTAACTTGCAACAATGATAATAGTGTGATAAGGGTTGATCTAGGAAATGCTGCTTTGTCTGGTCAACTTGTTCCACAGCTAGGCCTGCTCAAAAACTTGCAGTATTTGGAACTATACAGCAATAACATTACTGGCCCAATTCCGAGCGACCTGGGTAATCTTACTAACTTGGTGAGCTTGGATCTGTACTTAAACAGCTTCAGTGGTCCCATCCCAGATTCATTGGGCAAGTTGTCAAAATTGCGTTTCCTTCGGCTTAACAATAACAGCCTGACGGGTCCAATTCCTATGTCATTGACTAATATTTCATCTCTCCAAGTCCTGGATTTATCAAATAACCATCTGTCTGGTGTGGTTCCTGATAATGGCTCCTTCTCGTTATTCACTCCAATCAGTTTTGCTAACAATTTGGATTTATGTGGGCCAGTCACTGGGCATCCTTGTCCAGGATCTCCACCATTTTCTCCTCCTCCCCCTTTTGTCCCACCACCCCCAATTTCTGCCCCAGGAGATGGTGGTGCCACGGGGGCAATTGCTGGAGGTGTTGCGGCTGGTTGTGCCCTGTTATTTGCTGCTCCTGCAATTGCATTTGCATGGTGGCGACGAAGGAAACCACAAGAGTTTTTCTTTGATGTGCCTGCTGAAGAGGATCCTGAAGTCCATCTGGGACAGCTCAAGAGGTTTTCACTACGAGAACTGCAAGTTGCCACAGATAGTTTCAGCAATAAGAATATCCTTGGAAGGGGTGGATTTGGTAAGGTATACAAGGGACGCTTGGCAGATGGTTCATTGGTTGCTGTGAAAAGACTGAAAGAGGAGCGCACACCTGGTGGGGAGCTTCAGTTTCAGACTGAAGTAGAAATGATCAGCATGGCGGTGCATCGTAATCTTCTCCGTTTACGTGGGTTTTGTATGACACCTACCGAGAGACTACTTGTTTATCCCTATATGGCAAATGGAAGTGTTGCATCATGCTTAAGGGAGCGTCCAGCAAATCAATCGCCTCTAGATTGGCCAAATAGGAAGCAAATTGCTTTGGGATCTGCCCGGGGTCTTTCATATTTGCATGATCATTGTGACCCAAAGATTATTCATCGTGATGTTAAAGCTGCAAATATATTGTTGGACGAGGAGTTTGAGGCTGTTGTTGGTGACTTTGGGCTGGCAAAGCTTATGGATTACAAGGACACCCATGTCACAACTGCTGTGCGGGGCACGATTGGGCACATAGCTCCCGAGTACCTGTCAACTGGGAAGTCTTCTGAGAAAACTGATGTTTTTGGGTATGGTATCATGCTTCTGGAGCTCATAACTGGACAAAGAGCTTTTGACCTTGCTCGGCTTGCAAATGATGATGACGTCATGTTGCTTGATTGGGTAAAAAGCCTTCTCAAAGAGAAGCAGCTAGAAATGCTGGTTGATCCTGATCTACAGAACAACTACATAGAGGCCGAGGTAGAACAGCTCATCCAAGTCGCGCTTCTCTGCACTCAAGGCTCACCTATGGACCGGCCTAAGATGTCGGAAGTGGTGAGAATGCTCGAAGGCGACGGCCTGGCGGAGAGATGGGATGAGTGGCAGAAGGTCGAAGTTCTTCGACAGGAAGTGGAGCTGGCCCCGCATCCCAATTCCGATTGGATTGTTGACTCAACTGAGAATTTACATGCAGTCGAGTTATCAGGTCCTAGGTGA 1875 0.4656 MEIKDWTSAIFRLAVIVYSVWMISANMEGDALHSLRTNLQDPNNVLSSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGLLKNLQYLELYSNNITGPIPSDLGNLTNLVSLDLYLNSFSGPIPDSLGKLSKLRFLRLNNNSLTGPIPMSLTNISSLQVLDLSNNHLSGVVPDNGSFSLFTPISFANNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISAPGDGGATGAIAGGVAAGCALLFAAPAIAFAWWRRRKPQEFFFDVPAEEDPEVHLGQLKRFSLRELQVATDSFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPANQSPLDWPNRKQIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKSLLKEKQLEMLVDPDLQNNYIEAEVEQLIQVALLCTQGSPMDRPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPNSDWIVDSTENLHAVELSGPR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3112 624 Pfam Protein kinase domain 302 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g3112 624 FunFam Somatic embryogenesis receptor-like kinase 1 378 595 - -
Alju01g3112 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Alju01g3112 624 Gene3D Transferase(Phosphotransferase) domain 1 378 595 - -
Alju01g3112 624 FunFam Somatic embryogenesis receptor kinase 1 24 211 - -
Alju01g3112 624 SUPERFAMILY L domain-like 29 191 - -
Alju01g3112 624 Pfam Leucine Rich Repeat 165 182 IPR001611 GO:0005515
Alju01g3112 624 Pfam Leucine rich repeat N-terminal domain 25 65 IPR013210 -
Alju01g3112 624 SMART serkin_6 301 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g3112 624 FunFam Somatic embryogenesis receptor kinase 1 270 377 - -
Alju01g3112 624 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 586 - -
Alju01g3112 624 SUPERFAMILY Protein kinase-like (PK-like) 280 576 IPR011009 -
Alju01g3112 624 Gene3D Phosphorylase Kinase; domain 1 270 377 - -
Alju01g3112 624 Gene3D Ribonuclease Inhibitor 24 211 IPR032675 -
Alju01g3112 624 ProSiteProfiles Protein kinase domain profile. 301 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g3112 624 ProSitePatterns Protein kinases ATP-binding region signature. 307 329 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3112 Alju-ChrAlju01 54776925 54781914 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3112 18 624 Receptor kinase-like Gene Family AT1G71830 90.115 0.0 1044
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Alju01g3112 Pkinase 5.6e-45 CL0016