Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3097 ATGGCCACCTCCCAGCATCGCTGCGTTTTTGTTGGGAATATACCGTATGATGCCACAGAGGAACAGCTTATTGAAATCTGCCAGGAGGTTGGGCCTGTAGTATCATTCAGATTAGTCATCGATAGAGAAACTGGAAAACCAAAAGGTTATGGGTTCTGCGAGTATAAGGATGAAGAGACAGCTTTAAGCGCCCGTCGTAACCTTCAGGGTTATGAGATTAATGGGCGGCAGTTGCGTGTTGATTTTGCTGAAAATGACAAAGGTGCTGACAGAAATAGAGAACAGGGCCGTGGTGGGCCTGGATTGGCGGCAAATGTTGATCCTCAGAAACAAGTAGCTGGACCAGTTGTCCACGGGGACCATCAACCTATTGGTCTTCATATTGCTATAACAGCTGCAACTGTCATGGAAGCAGCTCTGGGGGGCCCTCAATCTGGCATCCAGTCAAATCAAAATGGTTTGCGGGTTCTGTCAGGATTGACACATGACCCTTTAACTCTGCATTTGGCCAAACTATCCCGAAATCAGCTGACTGAGATTGTCTCTGAGCTTAAGGCAATGGCTACACATAACAAGGAATTAGCTCGTCAGTTGTTACTATCTAGACCGCAGTTGCCTAAGGCTCTTTTTCAGGCGCAGATAATGCTAGGAATGGTGACCCCGCAAGTGTTACAAATGCCAAACATTAGGCAAGTTGCAGGTGAAACCTCGCAGCCTCCAGCAGAAGAAAACCACCTAGGTCAGTTTTCAGTGCTTCAATCGCTATCTGGGCTGCCTTCTCATGCTCAGATCAAGTTGCAATCTGGCTTGATGCCCAATCTTCAAGAAACTCAATCCAGTGCTTTACATCATAATCCTTTGGTTCCCAATCAATTAGTTGCACACCCAAAGCCTCCTTTGCAGCCTCGAATGCAGCTTCCACAACACCCAAGCAACCCAGTGGTACAGCTGGGCACATTGCCAGGGCATTCAAGTTTATCGCTTCCTTCTGTGCGTCCCCAGTCTTCATTCAGTTTGCCTGTTAGACCAACAAATCAGCCCGGTTTGTCTGGTGGACCTCCAATCCAGCTGACTTCTTCATCTTCTCTGACTCAGCAAATGCATTTGCTACAACATTCAGGGATTGGTAACTCAAGTGTAGGACAAAATATTCGGATGATTCGCCCAGATGCAGGCTTTCAGCCTGGCCCCTCCATATCATCAAGTATTCCTCTGTCAATGGGTAGGGAAGCTGACAGATCAGCTAAAGTTATTGAAGATTCTAATTGGGCCAAGAAAAGTAGTACATACTCAAATACTGCTCTTGGATCAGGGGAGAAAACAAATGAGCCTTCAGAACCATTTGACCGTCCTTCTAAGCTGATTAAGTTAGATGATGGGAGGAATGCGTCTTTCTCTGCTGGAGTTACAAATGTGCCTATTTCCAAGGGAAGTTCCCATGTTCTTGGAAGTGTGTCGTTGCCTGTAAATGCAACTTCAAAGTCGGAAATGCGATACCCTGAGCAACAATCCTCTCAGCCTCAGCTTCCGCCTGACGTGGAATCGGTTTTACTACAACAAGTGTTGAGTCTAACGCCTGAGCAATTGAGTTCCCTGCCACCGGAGCAGCAACAGCAGGTTTTACAGCTTCAGCAGGCTCTCCGGCAAGACCAGACCCAGCCTTCATAG 1668 0.4718 MATSQHRCVFVGNIPYDATEEQLIEICQEVGPVVSFRLVIDRETGKPKGYGFCEYKDEETALSARRNLQGYEINGRQLRVDFAENDKGADRNREQGRGGPGLAANVDPQKQVAGPVVHGDHQPIGLHIAITAATVMEAALGGPQSGIQSNQNGLRVLSGLTHDPLTLHLAKLSRNQLTEIVSELKAMATHNKELARQLLLSRPQLPKALFQAQIMLGMVTPQVLQMPNIRQVAGETSQPPAEENHLGQFSVLQSLSGLPSHAQIKLQSGLMPNLQETQSSALHHNPLVPNQLVAHPKPPLQPRMQLPQHPSNPVVQLGTLPGHSSLSLPSVRPQSSFSLPVRPTNQPGLSGGPPIQLTSSSSLTQQMHLLQHSGIGNSSVGQNIRMIRPDAGFQPGPSISSSIPLSMGREADRSAKVIEDSNWAKKSSTYSNTALGSGEKTNEPSEPFDRPSKLIKLDDGRNASFSAGVTNVPISKGSSHVLGSVSLPVNATSKSEMRYPEQQSSQPQLPPDVESVLLQQVLSLTPEQLSSLPPEQQQQVLQLQQALRQDQTQPS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3097 555 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 2 3 551 - -
Alju01g3097 555 MobiDBLite consensus disorder prediction 84 107 - -
Alju01g3097 555 MobiDBLite consensus disorder prediction 428 455 - -
Alju01g3097 555 Pfam Transcription termination and cleavage factor C-terminal 517 549 IPR026896 GO:0031124
Alju01g3097 555 MobiDBLite consensus disorder prediction 289 359 - -
Alju01g3097 555 SUPERFAMILY RNA-binding domain, RBD 4 101 IPR035979 GO:0003676
Alju01g3097 555 FunFam Cleavage stimulating factor 64 152 227 - -
Alju01g3097 555 Gene3D - 511 554 IPR038192 -
Alju01g3097 555 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 85 IPR000504 GO:0003723
Alju01g3097 555 SMART rrm1_1 8 81 IPR000504 GO:0003723
Alju01g3097 555 MobiDBLite consensus disorder prediction 307 359 - -
Alju01g3097 555 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 79 IPR000504 GO:0003723
Alju01g3097 555 MobiDBLite consensus disorder prediction 292 306 - -
Alju01g3097 555 Gene3D - 1 111 IPR012677 -
Alju01g3097 555 FunFam Cleavage stimulating factor 64 1 116 - -
Alju01g3097 555 MobiDBLite consensus disorder prediction 493 512 - -
Alju01g3097 555 Gene3D - 152 226 - -
Alju01g3097 555 CDD RRM_CSTF2_RNA15_like 7 83 - -
Alju01g3097 555 MobiDBLite consensus disorder prediction 388 413 - -
Alju01g3097 555 Pfam Hinge domain of cleavage stimulation factor subunit 2 162 225 IPR025742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3097 Alju-ChrAlju01 54315545 54337826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3097 9 82 Eukaryotic Initiation Factors Gene Family AT2G23350 31.081 1.43e-07 52.4