Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3046 ATGGCGGGAGCTACAGGTAGAGCCCTTATCACTCTCTCTCTGAACTCCAACCTCTCTGCGTTTGCACGCTTATCTCATGGCCACGCCATTCCATTTCTCAAACTATCTGCAAGACCCAGTAGGGTTTTGCTAGGATTTAGACCCATCTGCTCCATCACCTCCACCCCCACCCCCACGGCCACCGTTTCCGATACAACGGAGTCCATTGCTCCTGACCAAATCAAGCACTCAATTCTTCTTGAGAGACTCAGATTCAGGCACCTTAAAGACTCTTCTAAAACTCCAGAAATCAAGAAGTCAGCGAAATCAATTGCTATCCCTGAGAGGGGTCGCGAGAATGAGGGGAAGAAGTCAGAGAAGAAGAAGTTGGCGGGAAGTTTTGAGGAGTTGGGCCTCAGCGATGAGGTAATGGGAGCCGTGAGGGAGATGAATATTGAGGTTCCCACTGAGATTCAGTGTATCGGCATCCCTGCTGTATTGGAAGGGAAGAGTGTCGTTTTGGGATCTCATACTGGTTCTGGCAAGACTCTTGCTTACATGCTTCCCCTTGTTCAGTTGCTTAGACAGGATGAACAATTGAATGGATTACTTATGAAGCCCCGGCGTCCCCGGGCTGTTGTACTATGCCCTACGAGGGAGTTGTCTGAGCAGGTATTTCGAGTTGCAAAATCTATTAGCCATCATGCAAGGTTAAGGTCTACAATGGTAAGTGGGGGTGGCCGTCTCAGGCCTCAGGAGGATTCATTAAATAACCCCATTGACTTGGTTGTTGGTACTCCGGGCAGAATTCTGCAGCACATTGAGGAAGGCAACATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGAGGTTTTGGTCCGGATATACCCAAGTTTATTGGCCCACTAAAGCATCGTGCATTAAAACCTGATGGCCTAGGTTTTCAGACTATCTTGGTTACTGCAACCATGACAAAGGCAGTGCAAAACCTGGTTGATGAGGAGTTTCAAGGCATTGTGCATCTACGGACATCGACACTACATAAAAAGATTGCTTCTGCTCGTCATGATTTTATTAAGCTGGCAGGTTCTGAAAACAAGCTGGAGGCATTGCTACAGGTTCTGGAGCCAAGCCTGGCAAAAGGGAATAGAGTGATGGTTTTCTGCAATACATTGGACTCTAGCCGTGCAGTGGATCATTTTCTCAGTGAAAATCAGATATCTACCGTCAATTACCATGGAGAGGTACCAGCAGAGCAAAGGGTTGAAAACCTCCAGAAGTTTAAGAGTGATGAAGATGATTGTCCTACATTAGTTTGCACAGACTTGGCTGCTAGGGGTCTGGATTTGGATGTCGATCATGTTATCATGTTTGATTTTCCTTTGAACTCTATTGACTACCTCCACCGCACCGGTAGAACAGCTCGTATGGGTGCAAAAGGGAAAGTAACTAGCTTGGTTGCAAAAAAAGACACAACCTTGGCCACTCGAATAGAAGAAGCAATAAGGAAGAATGAGAGCTTGGAGGCTATCAGTAAAGAAAGTCTTAGGAGGGAGATTGCAAGGACCCAAATAACTCAGCAGAAGGGAAGGAATACCAAATTGGTAAAGATTTCCAAAGCAAAAAACACTTCTACTGTCCGTGCCACTTCCAGAAAAGCATTGAAACCATTAAAATCAGCAAAAGCATCAAAAAGTTCTTCCAGTGTTAACGCTGGTTCTAGGAAAGCATCCAAACCATTAAAAGCAGCGAAAGCAGGAGGGATTCAGGTTAAAAAATCTGTAAGATCTTCCGGTGCAAGCAACCCGAAGAAAGCTTCAGCGGGAAAGAAGCAGACAAGTAGAAGAGACAGTGCTAGCAAATCAGCGAATTCTAAACTGAGTGTTGTTGGTTTTAGGGGGAGGAGTTCTTCAAACAAGAAGGAATCACAGTTTTGA 1941 0.4544 MAGATGRALITLSLNSNLSAFARLSHGHAIPFLKLSARPSRVLLGFRPICSITSTPTPTATVSDTTESIAPDQIKHSILLERLRFRHLKDSSKTPEIKKSAKSIAIPERGRENEGKKSEKKKLAGSFEELGLSDEVMGAVREMNIEVPTEIQCIGIPAVLEGKSVVLGSHTGSGKTLAYMLPLVQLLRQDEQLNGLLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARLRSTMVSGGGRLRPQEDSLNNPIDLVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIPKFIGPLKHRALKPDGLGFQTILVTATMTKAVQNLVDEEFQGIVHLRTSTLHKKIASARHDFIKLAGSENKLEALLQVLEPSLAKGNRVMVFCNTLDSSRAVDHFLSENQISTVNYHGEVPAEQRVENLQKFKSDEDDCPTLVCTDLAARGLDLDVDHVIMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDTTLATRIEEAIRKNESLEAISKESLRREIARTQITQQKGRNTKLVKISKAKNTSTVRATSRKALKPLKSAKASKSSSSVNAGSRKASKPLKAAKAGGIQVKKSVRSSGASNPKKASAGKKQTSRRDSASKSANSKLSVVGFRGRSSSNKKESQF 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3046 646 Coils Coil 499 519 - -
Alju01g3046 646 Pfam DEAD/DEAH box helicase 149 332 IPR011545 GO:0003676|GO:0005524
Alju01g3046 646 CDD SF2_C_DEAD 356 488 - -
Alju01g3046 646 SMART helicmild6 397 479 IPR001650 -
Alju01g3046 646 Gene3D - 354 587 IPR027417 -
Alju01g3046 646 SMART ultradead3 144 353 IPR014001 -
Alju01g3046 646 Gene3D - 88 344 IPR027417 -
Alju01g3046 646 MobiDBLite consensus disorder prediction 595 609 - -
Alju01g3046 646 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 368 518 IPR001650 -
Alju01g3046 646 MobiDBLite consensus disorder prediction 562 576 - -
Alju01g3046 646 CDD DEADc 136 335 - -
Alju01g3046 646 MobiDBLite consensus disorder prediction 619 646 - -
Alju01g3046 646 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 125 153 IPR014014 GO:0003724
Alju01g3046 646 MobiDBLite consensus disorder prediction 526 552 - -
Alju01g3046 646 Pfam Helicase conserved C-terminal domain 368 479 IPR001650 -
Alju01g3046 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 490 IPR027417 -
Alju01g3046 646 MobiDBLite consensus disorder prediction 526 646 - -
Alju01g3046 646 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 156 343 IPR014001 -
Alju01g3046 646 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 68 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3046 Alju-ChrAlju01 51900243 51904881 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3046 126 501 Eukaryotic Initiation Factors Gene Family AT3G19760 28.871 1.27e-41 154