Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3044 ATGGGAAATATTGTTCCTTCTAGTGTTACCCCATCTCTGTTATTTTCTCTGTTCTTCTTCTGGCTGATCATGGCAAAGATGGAACAAGTCTCCACTCTCTCACCCGATGGACAAGCCCTTCTTTCCCTTATATCTTCAGCTGATCCTTCTGCAAAAGCCTCCTCTTCTGTTCTCTCTTCATGGAACCCATCAAGCCAAACCCCTTGTTTATGGCATGGTGTTACTTGCTCCCCACAAGGCAGAGTTATTTCGTTATCTATTCCAGACACTTTCCTTAACCTCTCTTCTCTGCCTTCCCAGCTTTCTTCTTTGTCATATCTGCAACTTCTCAATCTTTCTTCCACTAATATATCTGGCTCTATTCCACCTTCTTTTGGCCTGCTCTCCCATCTTCGCCTCCTTGATATTTCTTCAAATGCTCTCACTGGTTCCATTCCTCAAGAACTCGGGAAACTCTCTTCGCTGCAGTTCCTTTTCTTGAACTCCAATGGATTGACTGGAAGGATTCCTCAGCAACTTGCTAATCTTACTTCACTGCAAGTTTTCTGCCTTCAAGACAATCTCTTTAATGGGTCAATACCATCACAATTAGGCTCTTTGACATCTCTACAGGAGTTTCGGATTGGGGGTAATCCTTATCTAAGTGGTGCAATTCCTCAACAATTAGGACTTCTCACCAATCTCACTACATTTGGGGCTGCAGCCACTGGACTTTCAGGTGTTATTCCCTCTACATTCGGGAACTTGATCAATCTCCAAACGCTAGCACTTTATGATACAGAAATTTCTGGTTCTATACCACCAGAGCTTGGCTTGTGTTCTGAGCTGAGGAATTTGTATTTGCACATGAATAAGCTGACAGGTTCTATCCCACCTCAACTGGGTAAGTTGCAAAAGCTTACTAGCTTGCTTCTTTGGGGCAATGCCTTATCTGGGTCGATCCCTGCTGAGATTTCCAATTGTTCATCACTTGTTGTGTTTGATGCCTCTGCTAATGAACTTTTGGGTGAAATACCATACGATTTTGGAAAACTGGTGGTTCTAGAACAGCTCCATCTATCAGACAACTCTCTCACCGGGAAAATACCATGGCAACTGAGCAACTGCACTAATCTTGCTACTCTTCAGCTTGACAAGAATCAGTTATCAGGTACTATTCCATGGCAAGTTGGGAGATTGAAGTATTTGCAGAGTTTTTTCTTGTGGGGTAATTCGGTGTCTGGAACCATACCTTCCTCTTTTGGTAACTGTACAGAACTTTATGCACTTGATCTTTCAAGGAACAAGCTAACAGGTTCAATTCCAGATGAAATTTTCGGCTTGAAGAAGCTGAGTAAGCTTTTGCTTCTGGGAAATTCCTTGTCTGGAGAATTACCACCAAGTGTTTCAAATTGTGAGTCTCTAGTACGGTTGAGGCTTGGAGAAAATCAGCTTTCAGGACAAATTCCTAGAGAGATTGGCCAACTGCAGAATCTGGTGTTCCTCGACTTGTACATGAACCATTTCTCAGGAAGCTTGCCGGTGGAGATTGGTAACATCACAGTTCTTGAGCTTCTAGACGTTCATAATAATCAGATTACTGGGGATATCCCATCTCAGCTTGGGGAGCTTGTAAATTTAGAGCAGCTAGATTTCAGTAGAAACAGTTTGACAGGTGGAATTCCTTGGAGCTTTGGAAACTTAAGTTATTTGAACAAGCTCATTCTCAATAATAATTTACTCACAGGGTCAATCCCAAAATCCATTAGAAATTTGCAGAAGCTAACGCTATTGGATTTGAGTTACAATAACTTCTCTGGAGACATCCCATCTGAGATTGGTTATGTTACAAGTTTAACCATCAGTTTGGACTTGAGCTCAAATGCATTTACAGGAGAAATCCCCGAGTCAATGAGCGATTTGACTCAGTTACAATCACTTGATCTTTCTCATAATTTGCTCTATGGAGGAATTAAGATTCTTGGTTCCCTCACCAGTCTCACTTCCCTAAACATCTCCTACAACAACTTCTCAGGTCCTATCCCAGTAACTCCTTTCTTTAGAACCCTATCTTCAAATTCATATTTCGGGAATGCCCATCTCTGTGAATCCCTCGACGGGACCACATGTTCTAGTCTGCTTAGAAGAAATGGTCTAAAGTCTGCCAAAACCATAGCTTTGATATCGGTAATTCTTGCCTCAGTTACCATAGTTGTCATTGCATCTTGGATTTTGGTGACGCGAAATCACAAGAATATGATTGAAAAATCTTTGGGCACATCAACATCTGCTTCAGGAGCTGAGGATTTCTCATATCCTTGGACTTTCATCCCATTTCAAAAACTAAACTTCTCCATAGATAATATCTTGGTTTGCTTGAAGGATGAGAATGTGATTGGAAAGGGTTGCTCTGGCATTGTATACAAGGCTGAAATGCCTAGTGGGGAGTTGATAGCAGTAAAGAAGCTTTGGAAAGCAAACAAAGAGGAAGAAACTGTGGACTCTTTTGCTGCAGAAATTCAGATTCTTGGGCACATCCGGCATAGGAACATTGTGAGGCTCCTGGGTTATTGTTCTAACAGAAGTGTTAAGCTTCTTCTCTATAATTACATTCCAAATGGCAACCTAAGACAGCTGTTGCAAGGGAATAGGTATCTAGACTGGGAAACTCGGTACAAGATTGCTGTCGGGTCGGCTCAGGGTCTAGCATACCTTCATCATGACTGTTTACCAGCGATCCTTCACAGAGATGTTAAATGCAATAACATACTTCTAGATTCCAAGTTTGAGGCATATCTGGCAGATTTTGGTCTTGCTAAGCTGATGAGTTCACCAAATTATCACCATGCAATGTCCAGAGTCGCTGGATCTTATGAGTATGGCTATACCATGAATATAACAGAGAAGAGTGATGTCTACAGTTATGGAGTGGTTTTGCTTGAGATACTGAGTGGGAGAAGTGCTGTTGAGTCCCATGTTGGGGATGGAGTACACATAGTTGAGTGGGTGAAGAGGAAGATGGGAAGCTTTGAACCAGCAGTGTCAATTCTAGACACAAAGCTTCAAGGCCTACCAGATCAAATGGTGCAAGAGATGCTTCAAACTCTTGGGATTGCCATGTTCTGTGTCAACTCTTCACCGGCCGAACGACCAACGATGAAGGAGGTGGTGGCTCTGTTAATGGAGGTGAAGAGCCCACCTGAGGAGGTGGGAAAGACCTCCCAGCCTCTAATAAAGCAGTCCTCAAATCAAAGTTAA 3237 0.4245 MGNIVPSSVTPSLLFSLFFFWLIMAKMEQVSTLSPDGQALLSLISSADPSAKASSSVLSSWNPSSQTPCLWHGVTCSPQGRVISLSIPDTFLNLSSLPSQLSSLSYLQLLNLSSTNISGSIPPSFGLLSHLRLLDISSNALTGSIPQELGKLSSLQFLFLNSNGLTGRIPQQLANLTSLQVFCLQDNLFNGSIPSQLGSLTSLQEFRIGGNPYLSGAIPQQLGLLTNLTTFGAAATGLSGVIPSTFGNLINLQTLALYDTEISGSIPPELGLCSELRNLYLHMNKLTGSIPPQLGKLQKLTSLLLWGNALSGSIPAEISNCSSLVVFDASANELLGEIPYDFGKLVVLEQLHLSDNSLTGKIPWQLSNCTNLATLQLDKNQLSGTIPWQVGRLKYLQSFFLWGNSVSGTIPSSFGNCTELYALDLSRNKLTGSIPDEIFGLKKLSKLLLLGNSLSGELPPSVSNCESLVRLRLGENQLSGQIPREIGQLQNLVFLDLYMNHFSGSLPVEIGNITVLELLDVHNNQITGDIPSQLGELVNLEQLDFSRNSLTGGIPWSFGNLSYLNKLILNNNLLTGSIPKSIRNLQKLTLLDLSYNNFSGDIPSEIGYVTSLTISLDLSSNAFTGEIPESMSDLTQLQSLDLSHNLLYGGIKILGSLTSLTSLNISYNNFSGPIPVTPFFRTLSSNSYFGNAHLCESLDGTTCSSLLRRNGLKSAKTIALISVILASVTIVVIASWILVTRNHKNMIEKSLGTSTSASGAEDFSYPWTFIPFQKLNFSIDNILVCLKDENVIGKGCSGIVYKAEMPSGELIAVKKLWKANKEEETVDSFAAEIQILGHIRHRNIVRLLGYCSNRSVKLLLYNYIPNGNLRQLLQGNRYLDWETRYKIAVGSAQGLAYLHHDCLPAILHRDVKCNNILLDSKFEAYLADFGLAKLMSSPNYHHAMSRVAGSYEYGYTMNITEKSDVYSYGVVLLEILSGRSAVESHVGDGVHIVEWVKRKMGSFEPAVSILDTKLQGLPDQMVQEMLQTLGIAMFCVNSSPAERPTMKEVVALLMEVKSPPEEVGKTSQPLIKQSSNQS 1078
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3044 1078 SUPERFAMILY L domain-like 56 405 - -
Alju01g3044 1078 SMART LRR_typ_2 537 560 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 585 609 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 176 200 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 249 273 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 345 369 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 489 513 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 417 441 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 297 321 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 128 152 IPR003591 -
Alju01g3044 1078 SMART LRR_typ_2 634 661 IPR003591 -
Alju01g3044 1078 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 212 435 - -
Alju01g3044 1078 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 767 863 - -
Alju01g3044 1078 SUPERFAMILY Protein kinase-like (PK-like) 786 1054 IPR011009 -
Alju01g3044 1078 ProSitePatterns Protein kinases ATP-binding region signature. 792 815 IPR017441 GO:0005524
Alju01g3044 1078 FunFam Putative LRR receptor-like serine/threonine-protein kinase 436 705 - -
Alju01g3044 1078 Gene3D Ribonuclease Inhibitor 579 705 IPR032675 -
Alju01g3044 1078 Gene3D Ribonuclease Inhibitor 288 386 IPR032675 -
Alju01g3044 1078 Gene3D Ribonuclease Inhibitor 34 194 IPR032675 -
Alju01g3044 1078 Gene3D Phosphorylase Kinase; domain 1 760 863 - -
Alju01g3044 1078 ProSiteProfiles Protein kinase domain profile. 786 1071 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g3044 1078 Pfam Leucine rich repeat 396 454 IPR001611 GO:0005515
Alju01g3044 1078 Pfam Leucine rich repeat 106 165 IPR001611 GO:0005515
Alju01g3044 1078 Pfam Leucine Rich Repeat 348 369 IPR001611 GO:0005515
Alju01g3044 1078 Pfam Leucine Rich Repeat 539 561 IPR001611 GO:0005515
Alju01g3044 1078 PRINTS Leucine-rich repeat signature 420 433 - -
Alju01g3044 1078 PRINTS Leucine-rich repeat signature 634 647 - -
Alju01g3044 1078 Gene3D Ribonuclease Inhibitor 483 578 IPR032675 -
Alju01g3044 1078 Gene3D Ribonuclease Inhibitor 195 287 IPR032675 -
Alju01g3044 1078 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 308 1053 - -
Alju01g3044 1078 Gene3D Transferase(Phosphotransferase) domain 1 864 1071 - -
Alju01g3044 1078 SMART serkin_6 786 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g3044 1078 Pfam Leucine rich repeat N-terminal domain 34 77 IPR013210 -
Alju01g3044 1078 MobiDBLite consensus disorder prediction 1059 1078 - -
Alju01g3044 1078 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 33 196 - -
Alju01g3044 1078 Pfam Protein kinase domain 788 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g3044 1078 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Alju01g3044 1078 SUPERFAMILY L domain-like 394 678 - -
Alju01g3044 1078 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 864 1071 - -
Alju01g3044 1078 Gene3D Ribonuclease Inhibitor 387 482 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3044 Alju-ChrAlju01 51843570 51847268 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3044 32 1057 Receptor kinase-like Gene Family AT5G56040 45.594 0.0 845
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Alju01g3044 Pkinase 4.9e-39 CL0016