Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3004 ATGGAACACACCCTCCAAGCCGTCCTCGCTGCCGTCGTTAGCTTCTTCGTCGTTACCCTCATCTTCGCCGCCATCATCCTTCTCTGCAAAAGCAACACCAAAACCCATCCCCGTCAGCGTCAACACCGGGCCTCGACTCAAAATCGGACTCAGCCGGAGCTATCCTCCGTCGTCATCGACGGTAGCTGGTCGTTCGATCCCTTCGTTCAGTTCACCTGGGACGAGATCACTAAAGCTACCAAGAATTTCTCCCCCGACCTCATCATCGGCGACGGCAGCTTCGGCCTCGTCTACGAAGCGCGTCTCTCCAACGGCCTCGTCGTCGCCATCAAGAAGCTCTCGCCGGACGCATTCCAAGGATTTCGTGAATTCCGTGCTGAGATGGAAACCCTAACTAAGCTCCGGCATCCAAATATCGTCAAGATCCTCGGCTACTGGTCGGCGGGACAGGAGAGAATGTTGGTCTACGAGTTCATGGAGAGAGGCAATCTCGATCAATGGCTTCACGATCCGACGACCTCGTCGTCGTCTGGACACGCGGACGTTTTCATGCCGCGGGCCCCACTCCCGTGGGGGGTGAGGTTGAAGATAATTAGAGGCATTGCAAATGGGCTTTTATACTTACATGGGCTGGATAAGCCCATTATTCACAGAGACATTAAGGCTAGTAATGTGTTGCTGGACTCTGACTTTGAGGCCCATATTGCTGATTTTGGGCTCGCGAGGAGAATTGATACTTCGAACTCTCACGTGTCGACTCAGTTCGCCGGAACTATGGGCTACATGCCACCGGAGTACAGAGATGGGGTGAATGTGGCTAACGTGAAGGTGGATGTATACAGTTTCGGGGTTTTGATGCTCGAAACAGCAACAGGCCGGCGGCCTAATTTGTCGGTGAAGTTTGAGAATGAGGATATTGGGCTTGTGCAATGGGCCAGGAAAATGGAGGCCCAGGACTCCCAAATGGAAATGGTTGATCCCAATATTTCCAGAGAAGGAATAAGTGAAGATAGTGTGAAGGAGTACTTTAGGATTGCTTGTAAGTGCACGAGTGAATTACAGAAAGACAGACCTGTGATGCAAGAGGTTGTGGAATTGTTCGAGAAGATGGCCATGTAA 1119 0.5183 MEHTLQAVLAAVVSFFVVTLIFAAIILLCKSNTKTHPRQRQHRASTQNRTQPELSSVVIDGSWSFDPFVQFTWDEITKATKNFSPDLIIGDGSFGLVYEARLSNGLVVAIKKLSPDAFQGFREFRAEMETLTKLRHPNIVKILGYWSAGQERMLVYEFMERGNLDQWLHDPTTSSSSGHADVFMPRAPLPWGVRLKIIRGIANGLLYLHGLDKPIIHRDIKASNVLLDSDFEAHIADFGLARRIDTSNSHVSTQFAGTMGYMPPEYRDGVNVANVKVDVYSFGVLMLETATGRRPNLSVKFENEDIGLVQWARKMEAQDSQMEMVDPNISREGISEDSVKEYFRIACKCTSELQKDRPVMQEVVELFEKMAM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3004 372 SMART serkin_6 83 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g3004 372 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 3 369 - -
Alju01g3004 372 FunFam Phytosulfokine receptor 2 159 371 - -
Alju01g3004 372 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
Alju01g3004 372 ProSiteProfiles Protein kinase domain profile. 83 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Alju01g3004 372 FunFam Phytosulfokine receptor 2 45 158 - -
Alju01g3004 372 SUPERFAMILY Protein kinase-like (PK-like) 64 367 IPR011009 -
Alju01g3004 372 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Alju01g3004 372 CDD STKc_IRAK 89 370 - -
Alju01g3004 372 Gene3D Phosphorylase Kinase; domain 1 41 158 - -
Alju01g3004 372 Pfam Protein tyrosine and serine/threonine kinase 89 366 IPR001245 GO:0004672|GO:0006468
Alju01g3004 372 Gene3D Transferase(Phosphotransferase) domain 1 159 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3004 Alju-ChrAlju01 50179536 50180654 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3004 67 370 Receptor kinase-like Gene Family AT5G07280 45.574 2.61e-73 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Alju01g3004 PK_Tyr_Ser-Thr 1.4e-44 CL0016