Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g3001 ATGTCGTTCGCGAGATTCACGGGCCATGACGGGGCCGCAGATGAGGAAGAAGCACTGAACCCAACTGCGGCGGCCGTGGCGGCGGCCGGTGAGGAGGAGGAGGAGGATGAAGGTGTGTTTTCTGGATATAGCAGTAACAGAGAAGGTGAGTTGACTGCGATGGTTTCGGCGCTGACGCATGTGGTATCTGGATCTGGTGGTCAGGGTCGCACCGAATGGATCCCTGTGACGTCATCTCTTGGCCAGCCTTCTCCTTCTTCTTCTGCTTTGTCGCCATACTTGTCGTCTTCTTCTTCTTCTTCTTCATCCTCTGCTTCAGGCTCTGTTTTGAGCTCTGCCTCTGGTTCTACAGTCTCCTGGGTTGGCCACAAACGAGCACGTGACCAACAAAGCTCTGTCTATGGATCTTTCTCTGACTTCAGAGTTCCTTCTCAGGGACAATCATCTTCAGTGTCAGAGGAGGGACCGAGTGTAGCCGCCAGTGCGGTGGCGGAGACAGTGGCAGTTACGGCTGAGGAAAGCGGAGAGAGGAGGAGGAGGTACAGAGGAGTGAGGCAGAGGCCGTGGGGGAAATGGGCAGCGGAAATTCGCGATCCTCACAAGGCAGCGAGAGTCTGGCTTGGGACATTCGACACGGCGGAGGCGGCCGCCAAAGCTTACGACGATGCCGCATTGAGATTCCGAGGTAACAGAGCCAAACTAAATTTCCCTGAAAATGTCAGAGCTGTGCCCCCTGTTCACAACTTTCCAGCCACTCGCCTCACCGTAACCGATTCCCCAGCCACTCATTTTCAGCAACACACTCCTAACCTTCCTCCTCCACAACCACCACCTCCGCAGCAGCCACCGTTCTTCCAGTCGCCGTCTTTTCAGACACCATCGGACTTGATCAGAGACTACTGGGAATACTCTCAACTTCTTCAAAGCTCCGATGATTTCCAACAGCAACAACAGCAACAGCAACAACAGAATTCAAATTTATTGCAACAATGGCTCTATAATTCACAATTGGCTGCTCTTCAATCGTCTTCTATGTTATTGTCATCTTCACCTCTGTCTTCATCTTCTTCACCAACAGCATTCTCACCATCGAGCCAGCTATCCTCTGCTTCATATCCCCTGTTTTCTAGCCAGCAAGGAGGCTACTACCGACCACCACCGGGAAACCAACAGCCCGGCGGCAGTGGCGGAAACATCGGCGGTGGTTCAGACTTTCCGGCACCAACTTGGTCAGATACCAGTGGCTACCCTCCTCCTCCATCCGGTTCTGGCTGA 1275 0.5357 MSFARFTGHDGAADEEEALNPTAAAVAAAGEEEEEDEGVFSGYSSNREGELTAMVSALTHVVSGSGGQGRTEWIPVTSSLGQPSPSSSALSPYLSSSSSSSSSSASGSVLSSASGSTVSWVGHKRARDQQSSVYGSFSDFRVPSQGQSSSVSEEGPSVAASAVAETVAVTAEESGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAAKAYDDAALRFRGNRAKLNFPENVRAVPPVHNFPATRLTVTDSPATHFQQHTPNLPPPQPPPPQQPPFFQSPSFQTPSDLIRDYWEYSQLLQSSDDFQQQQQQQQQQNSNLLQQWLYNSQLAALQSSSMLLSSSPLSSSSSPTAFSPSSQLSSASYPLFSSQQGGYYRPPPGNQQPGGSGGNIGGGSDFPAPTWSDTSGYPPPPSGSG 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g3001 424 ProSiteProfiles AP2/ERF domain profile. 180 237 IPR001471 GO:0003700|GO:0006355
Alju01g3001 424 Coils Coil 310 330 - -
Alju01g3001 424 CDD AP2 188 239 IPR001471 GO:0003700|GO:0006355
Alju01g3001 424 PRINTS Ethylene responsive element binding protein signature 181 192 IPR001471 GO:0003700|GO:0006355
Alju01g3001 424 PRINTS Ethylene responsive element binding protein signature 203 219 IPR001471 GO:0003700|GO:0006355
Alju01g3001 424 PANTHER DNA-BINDING DOMAIN 124 330 IPR044808 GO:0003700|GO:0009873
Alju01g3001 424 MobiDBLite consensus disorder prediction 62 157 - -
Alju01g3001 424 MobiDBLite consensus disorder prediction 344 397 - -
Alju01g3001 424 Gene3D AP2/ERF domain 179 239 IPR036955 GO:0003700|GO:0006355
Alju01g3001 424 MobiDBLite consensus disorder prediction 344 424 - -
Alju01g3001 424 SMART rav1_2 180 243 IPR001471 GO:0003700|GO:0006355
Alju01g3001 424 SUPERFAMILY DNA-binding domain 180 238 IPR016177 GO:0003677
Alju01g3001 424 MobiDBLite consensus disorder prediction 1 45 - -
Alju01g3001 424 MobiDBLite consensus disorder prediction 260 289 - -
Alju01g3001 424 FunFam Ethylene-responsive transcription factor 2 179 238 - -
Alju01g3001 424 MobiDBLite consensus disorder prediction 62 156 - -
Alju01g3001 424 Pfam AP2 domain 180 229 IPR001471 GO:0003700|GO:0006355
Alju01g3001 424 MobiDBLite consensus disorder prediction 267 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g3001 Alju-ChrAlju01 49881014 49884310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g3001 172 251 AP2-EREBP Transcription Factor Family AT2G33710 72.500 1.42e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Alju01g3001 AP2 4.5e-14 CL0081