Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g2997 | ATGACAGAACCTTCCAAGGTCATTCACGTTCGAAACGTGGGGCATGAAGTATCCGAAAACGATTTGCTTACACTATTTCAGCCTTTTGGAGTCATAACAAAACTTGTGATGCTACGTGCAAAAAATCAGGCTCTTCTCCAAATGCAAGATATTCCTTCTGCAATTAATGCTTTACAGTTTTATTCTAATGTTCAGCCAAGCATTAGGGGTAGGAATGTTTATGTCCAATTTTCATCACATCAAGAATTAACTACTATGGATCAAAGTCAAGGACGAGGAGATGAGCCAAATCGAATTCTCTTGGTAACTATCCATCACATGCTTTATCCTATAACGGTGGATGTGCTGCATCAAGTGTTTTCCCCACATGGAATTGTTGAAAAAGTTGTGACATTTCAGAAATCAGCTGGCTTTCAGGCTCTCATTCAGTATCAATCACGTCAGAGTGCTGTGGTAGCTAGAAGCGGACTTCAGGGGCGTAATATTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGACGAATTACAAGTGAACTACAATAATGACCGTTCAAGAGACTTCACAAACCCAAATCTTCCTACTGAGCAGAAAGGAAGACCTTCACATCCAGGGTATGGTGATGCAGGAGGTATGTATGCTGTTCAAGGGGCAGTTGGATTTTCCCAGATGGCTAATGCTGCAGCCATTGCAGCTGCCTTTGGGAACGGTTTGCCTCCTGGAGTAACTGGGACAAATGATAGGTGTACAATTATTGTCTCAAATCTTAATCCTGATAGAATAGATGAGGATAAACTCTTCAACTTGTTCTCCCTTTATGGGAACATTGTGAGAATTAAACTCCTGCGAAATAAACCAGATCATGCACTTATCCAGATGGGGGATGGATTCCAAGCTGAATTGGCAGTACACTTCTTGAAGGGTGCCATGCTGTTTGGGAGGCAATTAGAGGTCAACTTTTCAAAGCATGCAAACATAACCCAAGGTCCTGACACACATGAGTACATAAATTCGAACCTGAATCGTTTCAATCGTAATGCTGCAAAAAACTATCGGTATTGCTGCTCCCCAACAAGGATGATCCACTTGTCCACTCTTCCTCAAGAGGTCACGGAAGACGAGATTGTGAACTTGGTTGAGGAGCATGGGGACATTGTCAACAGCAAGGTCTTTGAGATGAATGGAAAAAAGCAGGCTCTTGTTCAGTTTGAGAACGAAGAACAGGCCACTGAAGCACTCGTCTGCAAGCATGCAACCTCACTTTCTGGCTCCATCATTCGGATTTCCTTTTCACAGTTACAGAACATTTGA | 1320 | 0.4258 | MTEPSKVIHVRNVGHEVSENDLLTLFQPFGVITKLVMLRAKNQALLQMQDIPSAINALQFYSNVQPSIRGRNVYVQFSSHQELTTMDQSQGRGDEPNRILLVTIHHMLYPITVDVLHQVFSPHGIVEKVVTFQKSAGFQALIQYQSRQSAVVARSGLQGRNIYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPTEQKGRPSHPGYGDAGGMYAVQGAVGFSQMANAAAIAAAFGNGLPPGVTGTNDRCTIIVSNLNPDRIDEDKLFNLFSLYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGRQLEVNFSKHANITQGPDTHEYINSNLNRFNRNAAKNYRYCCSPTRMIHLSTLPQEVTEDEIVNLVEEHGDIVNSKVFEMNGKKQALVQFENEEQATEALVCKHATSLSGSIIRISFSQLQNI | 439 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g2997 | 439 | CDD | RRM3_PTBPH3 | 251 | 326 | IPR034797 | - | |
| Alju01g2997 | 439 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 252 | 326 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | MobiDBLite | consensus disorder prediction | 186 | 200 | - | - | |
| Alju01g2997 | 439 | Gene3D | - | 98 | 201 | IPR012677 | - | |
| Alju01g2997 | 439 | SUPERFAMILY | RNA-binding domain, RBD | 250 | 435 | IPR035979 | GO:0003676 | |
| Alju01g2997 | 439 | CDD | RRM1_PTBPH3 | 6 | 80 | IPR034795 | - | |
| Alju01g2997 | 439 | PANTHER | MATRIN 3/NUCLEAR PROTEIN 220-RELATED | 3 | 417 | - | - | |
| Alju01g2997 | 439 | MobiDBLite | consensus disorder prediction | 186 | 210 | - | - | |
| Alju01g2997 | 439 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 232 | 331 | - | - | |
| Alju01g2997 | 439 | Gene3D | - | 343 | 438 | IPR012677 | - | |
| Alju01g2997 | 439 | Gene3D | - | 1 | 97 | IPR012677 | - | |
| Alju01g2997 | 439 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 362 | 436 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 92 | IPR035979 | GO:0003676 | |
| Alju01g2997 | 439 | SMART | rrm1_1 | 101 | 170 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | SMART | rrm1_1 | 253 | 322 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | SMART | rrm1_1 | 7 | 76 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | SMART | rrm1_1 | 363 | 432 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 9 | 59 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 367 | 427 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | Pfam | RRM-like domain | 95 | 174 | IPR021790 | - | |
| Alju01g2997 | 439 | SUPERFAMILY | RNA-binding domain, RBD | 96 | 197 | IPR035979 | GO:0003676 | |
| Alju01g2997 | 439 | CDD | RRM4_PTBPH3 | 355 | 433 | - | - | |
| Alju01g2997 | 439 | Gene3D | - | 249 | 342 | IPR012677 | - | |
| Alju01g2997 | 439 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 6 | 80 | IPR000504 | GO:0003723 | |
| Alju01g2997 | 439 | NCBIfam | hnRNP-L/PTB/hephaestus splicing factor family | 4 | 435 | IPR006536 | GO:0003723|GO:0005634|GO:0006397 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju01g2997 | Alju-ChrAlju01 | 49488623 | 49493611 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju01g2997 | 254 | 416 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 24.118 | 8.50e-06 | 46.2 |