Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2941 ATGCTGGGGGACTCATCGTCGGCTGTACTGGGGGGCGGTGGAGGAGGAGGAAGCGGCGGTGGCGGTGGTAACTCTTCTGATGCAGTGGCGCCGACAGTCGTGGCTGCAGGGACGTCTTCGCATGACGGTGGCGAGTGGACAGTGGCGGCTGCTGCAGCCGCTGGATCGAACTCTGGGGAGGAAGATGCGAGGGGAAGAGGGGAAGAAGGTGACCGGAACTTCGGCGGCAACCGGTGGCCGCAGCAAGAGACGTTGGCGCTCTTGAAAATGCGCTCCGATATGGACGTAGCGTTTCGAGATGCTAGCGTTAAGGGTCCTCTCTGGGAAGAAGTTTCCAGGAAAATGGCAGAGCTTGGGTATCACAGAAGCGCCAAGAAATGCAAAGAGAAATTCGAGAACCTGTACAAGTACCACAAGAGAACAAAAGATGGCCGAACTGGGAAATCTGAAGGCAAAACGTATCGTTTCTTTGATCAATTAGAAGCTCTTGATCATCAAAACCGTCCTCCTCCTCCTCCTACAATTCAATCCTCACAACAGCCACCACAAGCACCACCATCAAAGCCCCCGTCGTCTCAGTTTATGGCAATACCTGCAACACCAGTTTCAGTGGTGGTGACGACGACGAATCCTCCTCCTCCTCATCTCTCTACTGTTCCATCAACGATCACACCTCAACCCAACAATGCTCTAACTCCACCTATGAACCTCACTTCTTCCGCCATTAATAACAATCCTCCACCTTCCTACACTATTTTCCCACCACCACCACCACCGTCAACATCAGCTGCAAATCCTATCCAATCTTCTTTCGCGGCTGACCTCTTGTCTAATTCACCATCTTCCTCGACTTCCTCAGACGAGTCCATAGAGCGGCGGCAGCGGCGGAAGCGGAAGTGGAAGGACTTCTTTGGGAGGCTGACTAAGGAGGTGATAGAGAAGCAGGAGCAACTGCAGAAGAGGTTATTGGAGGCCATTGAGAAGCGAGAACATGAGAGGATGGTTCGTGAAGAAGCTTGGAGAATGCAAGAAATGGCGAGGATTAATCGAGAGCGTGAAATATTGGCACAGGAAAGATCTTTAGCGGCTGCCAAAGATGCTGCTGTAATGGCATTATTGCAGAAGATTGCGGAACAGAAAAATCTCGGCCTCCCATTGAATAATATCAACATTTCTCCTCCTCCACCACAGCCACCGATGGCTCAACCAACAACACAACAAGCATCAGCTCCGGCTCCTCCTCCTGCTCAACCACAGCAGACTTCAGTGACAAACATGGAGATTGTAGCAACTGATAATAATAACAATAATGGGGAGAATTTGATGACACCGAGCTCGTCGAGGTGGCCGAAAGTGGAGGTTCAGGCATTGATAAAGCTAAGAACGAGCATGGACGAGAAGTACCAAGATAATGGGCCAAAAGGGCCGTTGTGGGAGGAGATCTCGGCGGCGATGAGGCGGCTCGGGTATAACAGAAACGCCAAGAGGTGTAAGGAGAAGTGGGAGAACATAAACAAGTACTTCAAGAAGGTGAAGGAAAGCAACAAGAAGAGGCCTGAAGATTCCAAGACCTGTCCGTATTTCCACCAGCTAGATGCTCTATACAAGGAGAAGAACAAGCATGAGATGATCAATACTCCTCATCCGACTTCGGCCACAGCTGCCGCCACCAACGCGAACCATAATCCGAATCTGGCGGATAATAATAGCACAATGCCGACATCAGTGCCGCCGCTGATGGTTCAGCCAGAGCAACAATGGCCTCCGCAGCAAGAAAACAACAACAGCAATGCAGAGTTGGAGGAGGAGGAGGAAGACGACATGGACGAAGAGAAGGATATTGAAGACGAAGATGATGAAGAAGAAGACGAAGAAGCGGAAGGAGGGGACAATTATGAGATAGTAGCAAGCAAGCCAGCTTCAGGAGTGCAGGAGTTGTCGAACGGAGAAGATTCCGGCGGCTGCGGAATGGCGGAAATGGGCGGCGGGTTGAGAGAAACAGGTAAACATGAGGGTGTGGGGGTATATAGGATGGGGATAGATCCATCTTGTGGGTAG 2058 0.5112 MLGDSSSAVLGGGGGGGSGGGGGNSSDAVAPTVVAAGTSSHDGGEWTVAAAAAAGSNSGEEDARGRGEEGDRNFGGNRWPQQETLALLKMRSDMDVAFRDASVKGPLWEEVSRKMAELGYHRSAKKCKEKFENLYKYHKRTKDGRTGKSEGKTYRFFDQLEALDHQNRPPPPPTIQSSQQPPQAPPSKPPSSQFMAIPATPVSVVVTTTNPPPPHLSTVPSTITPQPNNALTPPMNLTSSAINNNPPPSYTIFPPPPPPSTSAANPIQSSFAADLLSNSPSSSTSSDESIERRQRRKRKWKDFFGRLTKEVIEKQEQLQKRLLEAIEKREHERMVREEAWRMQEMARINREREILAQERSLAAAKDAAVMALLQKIAEQKNLGLPLNNINISPPPPQPPMAQPTTQQASAPAPPPAQPQQTSVTNMEIVATDNNNNNGENLMTPSSSRWPKVEVQALIKLRTSMDEKYQDNGPKGPLWEEISAAMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYKEKNKHEMINTPHPTSATAAATNANHNPNLADNNSTMPTSVPPLMVQPEQQWPPQQENNNSNAELEEEEEDDMDEEKDIEDEDDEEEDEEAEGGDNYEIVASKPASGVQELSNGEDSGGCGMAEMGGGLRETGKHEGVGVYRMGIDPSCG 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2941 685 MobiDBLite consensus disorder prediction 248 263 - -
Alju01g2941 685 PANTHER FI21293P1 54 610 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 221 247 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 389 418 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 193 212 - -
Alju01g2941 685 CDD GT1 447 512 - -
Alju01g2941 685 CDD GT1 77 142 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 1 78 - -
Alju01g2941 685 Coils Coil 312 332 - -
Alju01g2941 685 ProSiteProfiles Myb-like domain profile. 447 505 IPR001005 -
Alju01g2941 685 FunFam Trihelix transcription factor GT-2 449 510 - -
Alju01g2941 685 Gene3D - 449 510 - -
Alju01g2941 685 Gene3D - 79 140 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 166 192 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 264 287 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 544 669 - -
Alju01g2941 685 SMART sant 445 507 IPR001005 -
Alju01g2941 685 SMART sant 75 137 IPR001005 -
Alju01g2941 685 MobiDBLite consensus disorder prediction 137 296 - -
Alju01g2941 685 FunFam Trihelix transcription factor GT-2 79 140 - -
Alju01g2941 685 Coils Coil 593 620 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 597 630 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 545 596 - -
Alju01g2941 685 MobiDBLite consensus disorder prediction 137 162 - -
Alju01g2941 685 Pfam Myb/SANT-like DNA-binding domain 447 534 IPR044822 -
Alju01g2941 685 Pfam Myb/SANT-like DNA-binding domain 77 163 IPR044822 -
Alju01g2941 685 ProSiteProfiles Myb-like domain profile. 71 135 IPR001005 -
Alju01g2941 685 MobiDBLite consensus disorder prediction 389 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2941 Alju-ChrAlju01 43284623 43287776 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2941 68 587 Trihelix Transcription Factor Family AT1G76880 53.612 3.01e-160 473
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Alju01g2941 Myb_DNA-bind_4 1.9e-22 CL0123