Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2940 ATGATGATGATGCAGCACGGAGAGCCGACCACTGTCGTATTGGGGATGGTCGCTATGGCAGCGGCAACCAAAGCACCGCCTCCTCCTCCTCCGCCACCCGAAGCGGCGGAGGAGCCAGACGGAGGTGGCGAGATCATAATTGGGATGGATAATAATAAAGCAGCAGCAGCAGCAACAACTTCATCTGGTGAAGGTGACAATAAGATGAACAGTGGAGGGAACCGGTGGCCCCGCCAAGAAACTTTGGCTCTGTTGAAGATAAGGTCTGATATGGATTCTGTGTTTCGAGATTCAAGTCTTAAAGGTCCACTCTGGGAAGAAGTTTCAAGGAAGCTGGGAGAGCTTGGTTATGAGAGAAGCGCAAAGAAGTGCAAGGAGAAATTTGAGAACGTGTATAAGTACCACAAGAGAACCAAAGATAGCAGAAACGCCAAACCAGAAGGAAAGACCAAAATCTATAGGTTTTTTGATGAATTAGAAGCTTTTGAATCTCGATTTACTCCTTCACATCATTCTAAAGTTCAATCTCAATCTCAGTCTCAATCTCATCATCCTCCAAAATCATCATCGGAGCCTTCTAATTTGCCTCCAAATACACTTACCTCATTGCCATTTCTCTCAACAAGGCCTAGTGATCATTCATCAACTACTTTCTCTTACGTCACCGGTGTGACGACTACTACTATTAATACGGCTGTTCCATCTTTGAATAATAATCCGGGGGTGGTGAATATGGCGAACCTTTCAACCTCGACCTCGTCGTCCACGGACTCCGACGAGGACCTGGAGGAGAGGTACAGGAAGAAGAAGAAGTGGAAGGACTACTTTAGGAGGCTCACAAGGCGAGTGCTGGCTAGACAGGAGGAAATGCAAAGGAGATTTTTGGACGCCATTGACAAACGAGAGCGCGAGCGTGTGGCTCAGCAGGAAGCTTGGAGGATGCAAGAGATGGCTCGGATCAACCGCGAGCACGAAATCCTCGTTCAAGAAAGATCCACCGCCGCTTCCAAGGATGCCGCCATTATTGCATTCTTACAGAAGTTGTCCGGCGGATCACAGCAGCCTCCTCCTCCTACGCCGACGACGCCTCCGTTGTCATTGGTGTCACAGTTTCAACCACAGCCACCACCACCACAACAACAAAACCAGCAGCAGCCGCAGTTGGTAGTGATGATGCCGAGTAACAACATTAGCTACAAAAAGTTTGAAATCCAGAAAATGAATAACAACAATCACAACATCAATGGCAGTAGTGGTGGCGTCGGCGCCGGCGCTTCTTCACGGTGGCCGACTGCGGAGGTACATGCTCTGATAAGGCTGAGGACAAGCCTGGAGGCGAAGTATCAGGAAAACGGTCCTAAGGCTCCACTGTGGGAGGAAATATCAAGTGAGATGCAGAAATTCGGGTACAATAGGAATGCCAAGAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAGATCAAAGAAAGCAACAAACGAAGGCGTGAGGATAGCAAGACTTGTCCTTACTACAAAGAGCTCGATGCTTTATACAAAGAAAAGACCAAAAACCGTAACAACAACCTCTTCGGTAATTCGTTTAGTCACAATGTGGAGCCATTAATGGTCCAGCCAGAGCAGCAATGGAGGCCTCCAACTCAAGAAGAAGAAGCAGCAAGTCATCAGTATCAAGAATATGAAGAAGACGATGACGACGACTATGAGGAAGACGTAGGTGGGGTTGAAGAAGAAGATGGAGGAAGTATCGACTTAGAAGATGAAGAAGAAGGTGGTGGCCATGGCGGCGGTAATGGTGGTGACGGTGGTTATGAGAATAATAACTCGAGAAATAAACTTTCTTCAGTGGACACCGTTCAATAA 1872 0.4754 MMMMQHGEPTTVVLGMVAMAAATKAPPPPPPPPEAAEEPDGGGEIIIGMDNNKAAAAATTSSGEGDNKMNSGGNRWPRQETLALLKIRSDMDSVFRDSSLKGPLWEEVSRKLGELGYERSAKKCKEKFENVYKYHKRTKDSRNAKPEGKTKIYRFFDELEAFESRFTPSHHSKVQSQSQSQSHHPPKSSSEPSNLPPNTLTSLPFLSTRPSDHSSTTFSYVTGVTTTTINTAVPSLNNNPGVVNMANLSTSTSSSTDSDEDLEERYRKKKKWKDYFRRLTRRVLARQEEMQRRFLDAIDKRERERVAQQEAWRMQEMARINREHEILVQERSTAASKDAAIIAFLQKLSGGSQQPPPPTPTTPPLSLVSQFQPQPPPPQQQNQQQPQLVVMMPSNNISYKKFEIQKMNNNNHNINGSSGGVGAGASSRWPTAEVHALIRLRTSLEAKYQENGPKAPLWEEISSEMQKFGYNRNAKRCKEKWENINKYFKKIKESNKRRREDSKTCPYYKELDALYKEKTKNRNNNLFGNSFSHNVEPLMVQPEQQWRPPTQEEEAASHQYQEYEEDDDDDYEEDVGGVEEEDGGSIDLEDEEEGGGHGGGNGGDGGYENNNSRNKLSSVDTVQ 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2940 623 ProSiteProfiles Myb-like domain profile. 68 132 IPR001005 -
Alju01g2940 623 ProSiteProfiles Myb-like domain profile. 427 485 IPR001005 -
Alju01g2940 623 SMART sant 425 487 IPR001005 -
Alju01g2940 623 SMART sant 72 134 IPR001005 -
Alju01g2940 623 MobiDBLite consensus disorder prediction 349 386 - -
Alju01g2940 623 FunFam Trihelix transcription factor GT-2 76 137 - -
Alju01g2940 623 Gene3D - 76 137 - -
Alju01g2940 623 Gene3D - 429 490 - -
Alju01g2940 623 MobiDBLite consensus disorder prediction 168 211 - -
Alju01g2940 623 MobiDBLite consensus disorder prediction 353 382 - -
Alju01g2940 623 MobiDBLite consensus disorder prediction 543 623 - -
Alju01g2940 623 MobiDBLite consensus disorder prediction 605 623 - -
Alju01g2940 623 MobiDBLite consensus disorder prediction 22 77 - -
Alju01g2940 623 Pfam Myb/SANT-like DNA-binding domain 427 514 IPR044822 -
Alju01g2940 623 Pfam Myb/SANT-like DNA-binding domain 74 161 IPR044822 -
Alju01g2940 623 MobiDBLite consensus disorder prediction 54 77 - -
Alju01g2940 623 CDD GT1 74 139 - -
Alju01g2940 623 PANTHER FI21293P1 32 561 - -
Alju01g2940 623 MobiDBLite consensus disorder prediction 23 37 - -
Alju01g2940 623 MobiDBLite consensus disorder prediction 559 589 - -
Alju01g2940 623 FunFam Trihelix transcription factor GT-2 429 490 - -
Alju01g2940 623 MobiDBLite consensus disorder prediction 166 211 - -
Alju01g2940 623 CDD GT1 428 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2940 Alju-ChrAlju01 42835082 42837536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2940 62 545 Trihelix Transcription Factor Family AT1G76890 48.833 1.79e-133 401
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Alju01g2940 Myb_DNA-bind_4 2.3e-21 CL0123