LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g2939	ATGTCCTTCCGCAGTATAGTTCGTGATGTAAGGGATGGGTTTGGGAGCTTATCGAAGAGGAGTTTTGAGGTGAGGCTTCCTGGCCATCATAGGAAGTCACAAAGCTCAGTACACGAAATGCGGGATCAAGCTCCAGTTATACAGAACAGCCGTTGGGCTAGCCTTCCACCGGAGCTTCTTCGTGATGTTATCAAAAGATTGGAAACAAGTGAGAGTACATGGCCTGGTCGTAAACATGTAGTTGCTTGTGCTGGTGTGTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTGAGCAGTCCCGAGTTCTCTGGGAAGATTACTTTCCCTATTTCCCTAAAACAGCCTGGATTCAGGGATGGAACCATCCAGTGTTTCATCAAGAGGGACAAATCTAATTTGACATACCACCTTTTCCTTTGCCTTAGCCCCGCACTGCTTGTTGAAAATGGAAAGTTTCTTTTACAAGCAAAAAGGACAAGAAGAACTACATGCACAGAGTATATTATATCAATGGATGCAGAAAACATATCAAGATCTAGTACTAGGTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACACAGCCTCCCTACAATAATTCTCAGCCATCTCCACCTGGCCGAAGCCGTAGGTTTTATTCAAAAAAGGTTTCTCCAAAAGTCCCTAGCGGCAGCTACAATGTTGCCCAAGTCTCTTATGAGCTCTATGTGCTAGGGACTAGGGGACCTCGGCGGATGAACTGTACCATGTACTCCATCCCCGCATCATCTCTTGAGCCCGGTGGCATTGTCCCAGGCCAACCTGAGCTTCTTCCCCACTCCCTTGAGGATTCATTCAGAAGTATATCCTTCTCAAAATCGATTGACAATTCAACCGAGTTTAGCAGCTCGAGGTTCTCAGACATAATTGGTCCCACTGGAAATGAAGAGGAGGAAGGCAAGGAGAGACCACTAGTTCTTAAGAACAAGGCACCAAGGTGGCATGAGCAGCTGCAATGTTGGTGCCTAAACTTCCGGGGTCGGGTGACAGTTGCATCTGTAAAAAATTTTCAGGTGATTGCGGCAACCACACCACCCGCACCCGGTGCCCTGGCGCCAGCACAGCCATCACAGTCTGATCACGACAAGATTATTCTTCAGTTTGGCAAGGTTGGGAAGGACATGTTCACAATGGATTACAGATACCCCCTATCTGCGTTTCAGGCTTTTGCCATTTGCCTGACCAGCTTCGACACAAAACTGGCATGTGAATAG	1278	0.464	MSFRSIVRDVRDGFGSLSKRSFEVRLPGHHRKSQSSVHEMRDQAPVIQNSRWASLPPELLRDVIKRLETSESTWPGRKHVVACAGVCKSWREMCKEIVSSPEFSGKITFPISLKQPGFRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLQAKRTRRTTCTEYIISMDAENISRSSTRYIGKLRSNFLGTKFIIYDTQPPYNNSQPSPPGRSRRFYSKKVSPKVPSGSYNVAQVSYELYVLGTRGPRRMNCTMYSIPASSLEPGGIVPGQPELLPHSLEDSFRSISFSKSIDNSTEFSSSRFSDIIGPTGNEEEEGKERPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQVIAATTPPAPGALAPAQPSQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE	425

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g2939	425	Pfam	Tub family	113	420	IPR000007	-
	Alju01g2939	425	PANTHER	TUBBY-RELATED	40	423	-	-
	Alju01g2939	425	SUPERFAMILY	F-box domain	40	95	IPR036047	GO:0005515
	Alju01g2939	425	Gene3D	-	47	100	-	-
	Alju01g2939	425	ProSitePatterns	Tub family signature 2.	410	425	IPR018066	-
	Alju01g2939	425	CDD	F-box_AtTLP-like	52	96	-	-
	Alju01g2939	425	Gene3D	Tubby Protein; Chain A	110	425	IPR025659	-
	Alju01g2939	425	PRINTS	Tubby superfamily signature	328	345	IPR000007	-
	Alju01g2939	425	PRINTS	Tubby superfamily signature	403	425	IPR000007	-
	Alju01g2939	425	PRINTS	Tubby superfamily signature	168	184	IPR000007	-
	Alju01g2939	425	PRINTS	Tubby superfamily signature	233	260	IPR000007	-
	Alju01g2939	425	PRINTS	Tubby superfamily signature	382	401	IPR000007	-
	Alju01g2939	425	PRINTS	Tubby superfamily signature	184	208	IPR000007	-
	Alju01g2939	425	PRINTS	Tubby superfamily signature	346	362	IPR000007	-
	Alju01g2939	425	FunFam	Tubby-like F-box protein	47	100	-	-
	Alju01g2939	425	FunFam	Tubby-like F-box protein	109	425	-	-
	Alju01g2939	425	SUPERFAMILY	Tubby C-terminal domain-like	101	425	IPR025659	-
	Alju01g2939	425	Pfam	F-box domain	52	99	IPR001810	GO:0005515
	Alju01g2939	425	ProSitePatterns	Tub family signature 1.	346	359	IPR018066	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g2939	Alju-ChrAlju01	42521107	42523650	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g2939	1	425	TUB Transcription Factor Family	AT1G76900	68.410	0.0	597

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	TUB	Alju01g2939		Tub	1.9e-114	CL0395