Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2914 ATGGTTTTTATGGCAGTCAATATTATTCATTTCGGAAAAGACAGCCAATTGCCAATGTTAAGTATTGTTAAATTTCGTGGAATCTTTGTTGCTGGACAAGCTAATTTTCCACCATCATTAATCCCATATGCTGCATTTAGAATTTGTCACTTTGAGATCGAAGGGCATCAAAATGCATTGGGCAAACATTTGAATTCATCACCAACCAGAATGCAAAGCAGAGTTGGAGTTTTTTGGGATTTAGACAACAAACCACCCAAATCATTGCCACCTTACGAAGCTGCCACTAAGCTGAAAGCAGCTGCATCTCACTTTGGCGTTGTTAAGCATATGGTGGCTTATGCAAATCGTCATACTTTTAGCCATGTGCCTCAAAATGTTAGGGAACAAAGAAAAGAAAGGAAATTGGTAAATCATTTAGAGAACAAAGGTGTGATCAAGCCAGCTGAACCTTATCTTTGTCGGGTCTGTGGGAGAAAATTTTATACAAATGAGAAGCTTATTAACCATTTTAAGCAAATACATGAGCGTGAGCACATAAAAAGATTGAACACGATAGAGTCGGCAAAGGGGAACAGGAGGGTGAAGTTGGTTGCTAAGTTTTCCATGAAAATGGAGAAGTATAAGATTGCAGCAAGGAGCATTTTGACTCCCAAAGTGGGGTATGGTTTGGCAGATGCGATAAAACATGCAGGGTTTTGGGTTCGGACTGTGTTGGATAAGCCACAAGCTGCAGATGTTGCATTGAAAGGTCACATGGTAGATATGATGGATAATAAGCAGGTTGAGTGTGTGGTTCTTGTTTCAGATGATTCTGATTTTGTTGATGTATTAAAGGAGGCAAAGTTACGATGTCTCAAGACAGTTGTGGTTGGGGATACTAATGATGGGGCATTGAAGAGGACTGCTGATGCTGCCTTTTCTTGGGAGGAAATTCTGATGGGGAAGGCGAAGAAGGAGGCAATATCAGTTGTTGAAAAGTGGAAGGATCGTGATATCTTGAAAAGATTAGAGTGGACGTACAATCCTGAGGTGGAGAAAAAGAAATACAGTCCAGATGATATGGTCACTGAGGCTAATTTGGATGAAGATATTAGTGATACCTGTGATGAAGTTGATGGTGCCTATAGCAATAAAGAAGACTCAAATGCTTGGTGGGAATTAGATACTGATGATGGTTTCATAAATAGACAATTCTGA 1200 0.3983 MVFMAVNIIHFGKDSQLPMLSIVKFRGIFVAGQANFPPSLIPYAAFRICHFEIEGHQNALGKHLNSSPTRMQSRVGVFWDLDNKPPKSLPPYEAATKLKAAASHFGVVKHMVAYANRHTFSHVPQNVREQRKERKLVNHLENKGVIKPAEPYLCRVCGRKFYTNEKLINHFKQIHEREHIKRLNTIESAKGNRRVKLVAKFSMKMEKYKIAARSILTPKVGYGLADAIKHAGFWVRTVLDKPQAADVALKGHMVDMMDNKQVECVVLVSDDSDFVDVLKEAKLRCLKTVVVGDTNDGALKRTADAAFSWEEILMGKAKKEAISVVEKWKDRDILKRLEWTYNPEVEKKKYSPDDMVTEANLDEDISDTCDEVDGAYSNKEDSNAWWELDTDDGFINRQF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2914 399 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 67 393 - -
Alju01g2914 399 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 180 IPR013087 -
Alju01g2914 399 ProSitePatterns Zinc finger C2H2 type domain signature. 154 175 IPR013087 -
Alju01g2914 399 SUPERFAMILY beta-beta-alpha zinc fingers 149 178 IPR036236 -
Alju01g2914 399 Gene3D - 67 313 - -
Alju01g2914 399 Gene3D Classic Zinc Finger 152 178 - -
Alju01g2914 399 Pfam NYN domain 224 305 IPR021139 GO:0004540
Alju01g2914 399 CDD PIN_LabA-like 162 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2914 Alju-ChrAlju01 38300076 38301275 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2914 74 393 C2H2 Transcription Factor Family AT4G12240 64.486 5.44e-149 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g2914 NYN 6.4e-08 CL0280