Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2854 ATGGGTAGAGGAAGAGTAGAGTTGAAGAGGATAGAGAACAAAATAAACAGGCAAGTCACATTCGCTAAGAGAAGAAATGGCCTTCTCAAGAAAGCATATGAGCTTTCTGTTCTCTGTGATGCGGAAGTTGCTTTAATCGTCTTCTCCAATCGTGGCAAGCTTTATGAGTTCTGTAGCACATCAAGCATGCTGAAAACACTTGAAAGGTACCAAAAGTGCAGTTATGGTTCTGTGGAAGTGAGCAAACCAGCCAAGGAGCTTGAGACAAGTTACCGCGAGTACTTGAAGCTGAAAGGAAGATTGGAGTCTCTCCAGAGGACCCAAAGGAACCTTCTAGGAGAAGACTTGGGCCCACTGAACTCAAAGGAACTGGAGCAGCTTGAGCGCCAACTTGATTCATCTCTAAAGCAAGTCAGGTCCATCAAGACCCAATTCATGCTGGACCAGCTGAGCGATCTTCAGAATAAGGAGCAGGTTCTGGTTGAAGCAAACAGAACTTTGACTATGAAGCTAGAAGAAATCAGTTCAAGAAACAACTATAGACAATCCTGGGAAGGTGGAGATCAAAGCATGCCTTATGGTTCACAGAGTGCAAACTCTCAGGGCTTCTTCCAGCCTTTGGACTGCAATCCCACTTTACAGATTGGGTACAATACAGAGGGGTCAGAACAGATGACAGCAACAACACAAGGTCAGCAAGGGAATGGATTTATTCCTGGATGGATGCTTTGA 732 0.4495 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIVFSNRGKLYEFCSTSSMLKTLERYQKCSYGSVEVSKPAKELETSYREYLKLKGRLESLQRTQRNLLGEDLGPLNSKELEQLERQLDSSLKQVRSIKTQFMLDQLSDLQNKEQVLVEANRTLTMKLEEISSRNNYRQSWEGGDQSMPYGSQSANSQGFFQPLDCNPTLQIGYNTEGSEQMTATTQGQQGNGFIPGWML 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2854 243 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
Alju01g2854 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju01g2854 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 185 - -
Alju01g2854 243 Coils Coil 124 144 - -
Alju01g2854 243 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju01g2854 243 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju01g2854 243 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju01g2854 243 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Alju01g2854 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju01g2854 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju01g2854 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju01g2854 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju01g2854 243 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Alju01g2854 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju01g2854 243 FunFam MADS-box transcription factor 1 13 87 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2854 Alju-ChrAlju01 33692004 33697918 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2854 1 243 MADS-box Gene Family AT5G15800 73.664 1.91e-124 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju01g2854 K-box 3e-26 No_clan