Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2743 ATGACACGACGACCTGAACAGAGCTTGCCTATCTTGCTGACGGCCAAAACTGAGGTGTGCGGGTCGGGTAAGCCTGCTGCTGGTTCACCTGCATCTAGAAGGAGCTTGATTTGCCATTTGGAGTTCGTTGTCATCTTGCTCGTATGGACCATCGATGCTCAGCTAGTGGCTTCCCAACTAACACCTTATTTTCCTTCACTTCACAACAATGACCCATCATTTACACCAGTGGTTGTGGCCCTCGGGGTCTCCTTCTTGTTCGTCATCTTCTTCGCCTTCTATCTCCGCAACTGCGCCGACTCCAACCTCATCATCGTAGGCCCACCCGTAGCCTCCGCCGCCATCGTCGTCAATTACAGTACTTCCCGCGGAGAACCTGAAGGCATCGACCCCAAATTACTTGATACTTTTCCCATCCTCATGTATTCCAACCTCAACAAAGACCTGATCAGGCTTGGTGGGAATGTCCCGCTGGATTGTGTGGTGTGCTTGACGGAGTTCGAACACGATGACATGCTCCGGTTGCTTCCGGAATGCAAACACGTGTTCCATCCTGATTGCATCAAGAAGTGGTTATCTTCTAACGTGACTTGTCCTGTTTGTCGAGCGGTGTTGAAGCCGGAGGAGGAAGTCGCGGTGGTGATTCGGCATGAGGTCATTGAACCGCCGGAGGAGGAGGAGGTTGGTGATAGATCGGCGAGACGGGTGGCGGCGATGAGGACGGCGGAGGTAAGTTGTGGAGAGAGAGGATTGAGGAGGTGTCATTCAACGGGTCACTCTCTGGATTTGAGATCGATGAGGGATGATGTGTGGAAAGAGATTATGGGTTGGAGTACTCCGACGAACTACGATGTGTTTGAAGGACGTCAAGATGAAGGAACCAGTCAAGGACGCTTGTTTCCGGTAATGTGTCTGCGTCTTCCTCATCCTCTTATTCTGATTACATTTCTACCCTTTCTATATACTACCTCGCTCTCTTTTTTATAG 987 0.5086 MTRRPEQSLPILLTAKTEVCGSGKPAAGSPASRRSLICHLEFVVILLVWTIDAQLVASQLTPYFPSLHNNDPSFTPVVVALGVSFLFVIFFAFYLRNCADSNLIIVGPPVASAAIVVNYSTSRGEPEGIDPKLLDTFPILMYSNLNKDLIRLGGNVPLDCVVCLTEFEHDDMLRLLPECKHVFHPDCIKKWLSSNVTCPVCRAVLKPEEEVAVVIRHEVIEPPEEEEVGDRSARRVAAMRTAEVSCGERGLRRCHSTGHSLDLRSMRDDVWKEIMGWSTPTNYDVFEGRQDEGTSQGRLFPVMCLRLPHPLILITFLPFLYTTSLSFL 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2743 328 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Alju01g2743 328 FunFam E3 ubiquitin-protein ligase ATL6 118 208 - -
Alju01g2743 328 Pfam Ring finger domain 159 202 IPR001841 -
Alju01g2743 328 SUPERFAMILY RING/U-box 159 207 - -
Alju01g2743 328 SMART ring_2 160 201 IPR001841 -
Alju01g2743 328 CDD RING-H2_EL5-like 159 202 - -
Alju01g2743 328 PANTHER RING FINGER DOMAIN-CONTAINING 73 205 - -
Alju01g2743 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 208 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2743 Alju-ChrAlju01 28730947 28733427 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2743 39 226 Rapid Response to Elicitors AT3G05200 36.224 4.80e-30 116