Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2728 ATGATTCAAACCATTCGATTCCATTTTAGCATACTCAAATGGGTTCAGCTGATTTACCTGATATTCGTGCTAGGCGCCGCCGCACAATCCGCCGTGCAGCCGGTGCCGACCTTCGCATCCCGGCAGCAGTGGGACCCTTCAATCGCTGCCATGGTGGGTGCCCTGTTCTGCGCCTTCCTATTCATGGGCTTCTTCTCTGTCTACCTCCGCCATTGCGCCGAGGAGGAAGCCACCGCCGGCCCGGCCGGAGACTGGTCGTGCTCGTGCTCAGAGGGCATTGATCGGAAAGTCCTGGACACGTTCCCCGTCCTCGTTTATTCCACCATCAAGGACCTTAAAATGGGTAAAGGAGCGCTTGAATGTGCAGTGTGCTTGAACGAGTTCAAAGATAACGAAACTCTCCGATTACTTCCCAAATGTAACCACGTGTTCCATCCTTCTTGTATCGAAGCTTGGCTCTCTTCTCACGTGACTTGCCCTGTTTGCCGGGAAAAGCTAACTCCAGATTACGATCAAGTGGCCATAACGGTTCCTCCACAATTGAACGTTATGGAGAGTAGTGATAATAATTGCAGAGGTGAACATGAGGAAGAAGGAAAAGATGAGACTCCTGAAGAAAGGAGTGGTGAGAACGGCGGCGATGGTGGTGGTGAGGTTGAGGACTGTGCGATGGCCGTCGGAGGAGATCAGAGGTTGACAGTGTTGAGGAAGTCGAATTCGACGGGTCATTGTGAGGTGGAGAGGTATACGCTGAAGTTGCCGGAGGACGTTCGGAATTATATTCTGGTGAACCATCACGGGTCGATGATGTGGCGGTCGGCAAGTTATAACGTGGGAATGTTCATGGGAGGGAGTCCGAGGAAATGGTTGTATCGGAATGAGAAGAAGGTTATCGAGAAGGATAAGGAAGATCTTGTTCATACTCCATCTTCATTGGTTCCTTGA 945 0.5122 MIQTIRFHFSILKWVQLIYLIFVLGAAAQSAVQPVPTFASRQQWDPSIAAMVGALFCAFLFMGFFSVYLRHCAEEEATAGPAGDWSCSCSEGIDRKVLDTFPVLVYSTIKDLKMGKGALECAVCLNEFKDNETLRLLPKCNHVFHPSCIEAWLSSHVTCPVCREKLTPDYDQVAITVPPQLNVMESSDNNCRGEHEEEGKDETPEERSGENGGDGGGEVEDCAMAVGGDQRLTVLRKSNSTGHCEVERYTLKLPEDVRNYILVNHHGSMMWRSASYNVGMFMGGSPRKWLYRNEKKVIEKDKEDLVHTPSSLVP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2728 314 CDD RING-H2_EL5-like 120 163 - -
Alju01g2728 314 ProSiteProfiles Zinc finger RING-type profile. 121 163 IPR001841 -
Alju01g2728 314 MobiDBLite consensus disorder prediction 183 219 - -
Alju01g2728 314 SMART ring_2 121 162 IPR001841 -
Alju01g2728 314 MobiDBLite consensus disorder prediction 189 214 - -
Alju01g2728 314 SUPERFAMILY RING/U-box 120 172 - -
Alju01g2728 314 FunFam E3 ubiquitin-protein ligase ATL6 84 169 - -
Alju01g2728 314 Pfam Ring finger domain 120 163 IPR001841 -
Alju01g2728 314 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 171 IPR013083 -
Alju01g2728 314 PANTHER RING FINGER DOMAIN-CONTAINING 38 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2728 Alju-ChrAlju01 28371196 28372140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2728 8 304 Rapid Response to Elicitors AT3G05200 34.940 5.62e-53 177