Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2726 ATGGAGGAGCGCATTCTTCAGAATCCTTCAGACATGATTGATGAAGCTAGAGATCAAATTGAACACCACCTCCAAGTACCTAAAAATGTAGTAGAAGATGAAGAAGATGGATCATCTGAAGAACTAGGAGAAGATCCTGTTGAAGAGGTTGAGCTAAAGCAGCTAGAAGAAACAACTCCTGACGGGAATGATTGCAAATCAGGAGTTGTTAAATCGAATGATAAGAAGAGGGTTCTGAATGCTGCATCTGGTGAATTAACTACATTGCTATGCTATCAGTCACAAAAGAAGTGCAAGCAAGTGGGATCTTCTGGTCTGAAATTAGAATCTGGACCTCCAGATAATGACTCTGTCACTGCAGTGACATCTATTGATAATTCTACTCCCAAAGAAGGTACCGGAAGTTCTGAAAAACGAAGCCGCAGCAGATGGGAACCACAGTCTGAGGAAGATGGTGTAGGAGACAATCATACTTGCAACAGGAAGAAAACCAGGTGGTCCAATGAGGACACTCAACTAAAAATGCTGGGGCCACTTCAGCTGCCTGATTTCACAAAAGATTTTCTGGTTCGATATGAGAATAATCCTGAAATTCAAGGGCTGAAAGCTGAGCTTGTTGAGATTAATAGAAGATTGCATGGACCTCTTCATGATGATATGCTTGAGGAGGAAAGATCTCCTTCACCAGAACCAATATATGATAACGTTGGCAACAGAATAAATACAAGAGAAGCAAGACTTCGCCAGAAACTTGTCCAGAAACGTCAAGATATCATATCAAAATTGATCAAATCAAACCAAAGTTTTAGCACTCCACCTGATTACAAGCCTCCAAAGCTCTTCAAAAAACTTTACGTACCAGTCAAAGAATATCCAGAGTACAATTTTGTTGGCCTTATAATTGGTCCTCGGGGAAACACACTGAAGAGAATGGAAAATGAAACTGGGGCCAAGATTCATATAAGAGGAAAAGGATGCACAAAAACACCCTACAGATCTGCCTCTTCTAAAGAGGACTTGCATGTGTACATAGAAACAGACAACAAAAATTCTCTGGATGCAGCTGTTGCGATGGTTGAAAAATTGCTAATCCCTGTTGAAGGAAGAAATGAGCACAAGGAGGCTCAATTAAAGGAGCTGGCCAAGCTGAAAGGAACAGCTAGGGATGAAGATTTGTGCTATGTTTGTGGTGACCAGGGACATCTGTCATATGCCTGCCCTGACCTTCAAACAACTTTCAAAGTGAACCCAAGGGGTACGTGTTTAAGTGCCACTCCCTTGAATGTGTTATCTCCACATAATGACTCTGTGCAGGGTTCTGGGTTTGGTTTTAGTTCCAGTTCAACAGAGAGTACACAACAGCAGAGGTCTGAAAAGAAATCATTGATGAATAATATTTACGTTGGCAATCTGCCTCAAGAGATTGATGATAATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCCTTGAAGCAAAAATAATGAAGGATCCAAGAACTGGAATTAGTAGACAGGTTGGTTTTATCGAGTTTGACAATGCCATGGATGCACAAGCAGCTGTGACTCGTATGAACGGTTTTAGAATGGATGGGGGTAGATTTTTGAACGTAATGATAGCTAGGCTTTTGTCATATACTGAATGTTTAAGCTTGAACCTTGTTCCAAAGCGCTCTGGTCCTGCAGGTATATCCCAAAGTGTCAGAAACCAACAAGATCGGTCTCGGTCTCGGTCTCGCCCTCGCCCATTACATGTTATGCTGCCAGAACATCCAACTTCCTTTCACAACAGCGGTGGCGGGGATCTGTTTTCTCCTCCAAGCTGCTGCTCAAGCACTTCTGATCTTAGCAATTCTGGCAAAATGCATTTTTCACGAAACTTCTCAGATCAAAGTGTTTCCTTATCTGGTAGTTCAATTTCAGAGAGTCCTGGCTCCCAATATCAGTCTTATTCTGTGACGCCGCCTCTCGGTAAAGCTGCACTGCCCAAGCCTGAACACAGATCAGAAGATGTGAAGTCTTTCCCTTCTTCATTGCAGAGAAGGTATTTCAGGGAACTTAATTGA 2067 0.4209 MEERILQNPSDMIDEARDQIEHHLQVPKNVVEDEEDGSSEELGEDPVEEVELKQLEETTPDGNDCKSGVVKSNDKKRVLNAASGELTTLLCYQSQKKCKQVGSSGLKLESGPPDNDSVTAVTSIDNSTPKEGTGSSEKRSRSRWEPQSEEDGVGDNHTCNRKKTRWSNEDTQLKMLGPLQLPDFTKDFLVRYENNPEIQGLKAELVEINRRLHGPLHDDMLEEERSPSPEPIYDNVGNRINTREARLRQKLVQKRQDIISKLIKSNQSFSTPPDYKPPKLFKKLYVPVKEYPEYNFVGLIIGPRGNTLKRMENETGAKIHIRGKGCTKTPYRSASSKEDLHVYIETDNKNSLDAAVAMVEKLLIPVEGRNEHKEAQLKELAKLKGTARDEDLCYVCGDQGHLSYACPDLQTTFKVNPRGTCLSATPLNVLSPHNDSVQGSGFGFSSSSTESTQQQRSEKKSLMNNIYVGNLPQEIDDNRLSELFSPFGKILEAKIMKDPRTGISRQVGFIEFDNAMDAQAAVTRMNGFRMDGGRFLNVMIARLLSYTECLSLNLVPKRSGPAGISQSVRNQQDRSRSRSRPRPLHVMLPEHPTSFHNSGGGDLFSPPSCCSSTSDLSNSGKMHFSRNFSDQSVSLSGSSISESPGSQYQSYSVTPPLGKAALPKPEHRSEDVKSFPSSLQRRYFRELN 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2726 688 SMART kh_6 280 364 IPR004087 GO:0003676
Alju01g2726 688 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 464 543 IPR000504 GO:0003723
Alju01g2726 688 Gene3D - 193 273 IPR047086 -
Alju01g2726 688 Gene3D K Homology domain, type 1 277 392 IPR036612 GO:0003723
Alju01g2726 688 Pfam KH domain 295 360 IPR004088 GO:0003723
Alju01g2726 688 SUPERFAMILY RNA-binding domain, RBD 450 542 IPR035979 GO:0003676
Alju01g2726 688 CDD KH-I_BBP 279 364 - -
Alju01g2726 688 ProSiteProfiles Type-1 KH domain profile. 295 359 - -
Alju01g2726 688 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 466 534 IPR000504 GO:0003723
Alju01g2726 688 Coils Coil 370 390 - -
Alju01g2726 688 MobiDBLite consensus disorder prediction 440 459 - -
Alju01g2726 688 MobiDBLite consensus disorder prediction 635 654 - -
Alju01g2726 688 SMART rrm1_1 465 539 IPR000504 GO:0003723
Alju01g2726 688 PANTHER RNA-BINDING PROTEIN RELATED 131 585 IPR045071 -
Alju01g2726 688 Pfam Splicing factor 1 helix-hairpin domain 162 276 IPR032570 -
Alju01g2726 688 MobiDBLite consensus disorder prediction 27 48 - -
Alju01g2726 688 MobiDBLite consensus disorder prediction 103 166 - -
Alju01g2726 688 ProSiteProfiles Zinc finger CCHC-type profile. 393 408 IPR001878 GO:0003676|GO:0008270
Alju01g2726 688 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 280 394 IPR036612 GO:0003723
Alju01g2726 688 Gene3D - 444 585 IPR012677 -
Alju01g2726 688 MobiDBLite consensus disorder prediction 635 677 - -
Alju01g2726 688 MobiDBLite consensus disorder prediction 560 600 - -
Alju01g2726 688 MobiDBLite consensus disorder prediction 132 166 - -
Alju01g2726 688 MobiDBLite consensus disorder prediction 115 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2726 Alju-ChrAlju01 28340029 28342095 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2726 457 531 Eukaryotic Initiation Factors Gene Family AT1G49760 40.000 7.32e-10 60.5