Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2720 ATGGCTCCACTGCTGGTGGATCACAAAGGGGAGTCCTCGGCCGGTGAGTCTCAGAGGTCTATTCCGACGCCTTTTTTAACCAAAACTTATCACCTTGTTGACGATCACACCATAGACGATGTTATATCCTGGAACGAAGATGGATCCAGTTTCATCGTTTGGAATCCTACGGTTTTCGCCAGAGATTTGCTTCCTAAATATTTTAAACACAACAATTTCTCTAGCTTCGTCCGCCAACTTAACACCTATGGATTCAGAAAAGTAGTTCCCGATCGGTGGGAATTCACAAACGAGTGTTTTCGCAGAGGCAAGAAACAACTTCTGTGCGAAATTCAGCGTCGGAAAATCTCATCGCCTTCGGCAACATCAGCTGGTGCAACTACTGTAGCGTCAGTTCTGGCGACGCCGCCATTGACGGCAATACCAACGGCGAAGCCTATCATATCGCCTTCTAACTCAGGGGAAGAACAGTTCATTTCGTCGAATTCATCGCGGACCAGAGCTTCGGCTGAACTCTTAAACGAGAACGAGAGGCTGAGAAAAGAAAACGTTCAGCTGAGCAAGCAATTAGCAGAGATGAGATCCCTGTGTAACAACATATTCAATCTAATGTCAAAATATGCAAACAACCAAGATATCAGTTTGCAATGTACAGCGAGTGACTTCACAGCCGTGAAACCGCTCGATTTGATGCCGGCCGCGCAGAACTCCGGTCACTTGGACACGGTGGCGATGGTGGAAGACGAAAGGAATCCGAAGCTGTTCGGGGTGGCGATCGGTACGAAGCGATCACGGGAAGGAGGAGCAGGTGGCGATCCAGTGCGAACCATGCACAGAGCGGGGCCCGCAGAGATGAAATCAGAGCCGTTGCGTTGCCAGAGGCGTCGAGATAATCAGGAAGTGCCGTGGCTGAATCAATGCCATAACGCGAATCAGAGAGTGTGTAATTAA 951 0.4911 MAPLLVDHKGESSAGESQRSIPTPFLTKTYHLVDDHTIDDVISWNEDGSSFIVWNPTVFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFTNECFRRGKKQLLCEIQRRKISSPSATSAGATTVASVLATPPLTAIPTAKPIISPSNSGEEQFISSNSSRTRASAELLNENERLRKENVQLSKQLAEMRSLCNNIFNLMSKYANNQDISLQCTASDFTAVKPLDLMPAAQNSGHLDTVAMVEDERNPKLFGVAIGTKRSREGGAGGDPVRTMHRAGPAEMKSEPLRCQRRRDNQEVPWLNQCHNANQRVCN 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2720 316 Coils Coil 169 196 - -
Alju01g2720 316 MobiDBLite consensus disorder prediction 1 20 - -
Alju01g2720 316 Gene3D - 17 115 IPR036388 -
Alju01g2720 316 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 16 276 IPR027725 -
Alju01g2720 316 MobiDBLite consensus disorder prediction 263 289 - -
Alju01g2720 316 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g2720 316 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g2720 316 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g2720 316 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g2720 316 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Alju01g2720 316 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Alju01g2720 316 FunFam Heat stress transcription factor B-4 17 115 - -
Alju01g2720 316 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2720 Alju-ChrAlju01 28174059 28175103 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2720 10 316 HSF AT5G62020 48.447 1.53e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Alju01g2720 HSF_DNA-bind 4.3e-33 CL0123