Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2696 ATGGATGTAGATGGGGGAAATAAACGCGTCTTTCAGCGTCTTCGTGGGCCTCCTCCTGATGCCAGGCAACAGAAAGTGTGTTTTCATTGGCAGGCAGGAAGGTGCAACAGATATCCATGCCCGTTTCTACACAGTGAATCACCTCCTCCAAATGCCAATGGGATGTCTTCGAAAAGGTCCCATGGGTCTTCTGATGATTCAGGATTCTCAGGTCCACGGAGGAATCCGAATTTTAGTGGATCGTCAACGTGGGGCGGGGTTCGTGGTGTTAATAAATTAATTAGGAAGACTGAAAAACTTTGTAATTATTGGGTTCAGGGGAAATGTAGTTATGGAGACAGTTGTAAGTACCTTCACTCTTGGAGTGTAGGGGATGGTTTTTCCTTACTAACGCAACTTGAAGGGCATCAGAAGGTTGTGACTGGAATATCTCTGCCATCTGGTTCAGATAAGCTTTATACCGGAAGTAAAGATGAGACAGTGAGGCTTTGGGATTGCCAGTCTGGTCAGTGTTTGGCTGTGATTAATCTTGGATGTGAAGTGGGTTGTATGATTGTTGAAGGTCCTTGGCTTTTTGTTGGTATGCCTAATTTTGTTAAGGCCTGGAACATCCAAACATCAGGTGAACTGAGTCTGAGTGGCCCTGCTGGACAAGTTTACACTTTGGCTGTGGGTAACAACATGCTTTTTGCTGGTACACAGGAGGGGTCAATATTGGCATGGAAGTTTAATGCGGCTACTAACACCTTTGAGCCTGTTACATCACTTTTGGGTCATTCTGGTCCTGTTGTTTCATTTGTTGTTGGAGCAAATAGGCTATACTCAGGCTCAATGGACAAGACAATAAGAGTCTGGAACCTTGAGACATTGCAGTGTTTACAGACTTTAACAGGGCATACGTCAGTTGTGATGTCTGTTCTTTGCTGGGACCAGTTTCTTTTATCTGCTTCGTTAGACAAATCAGTAAAGGTATGGGTAGCTACAGAAAGTGGAAACTTGGAAGTGACATATACTCACAACGAGGAAGATGGTGTGCTTAAACTGTGTGGGATGCACGATTCACAAGGCAAGCCCATTTTACTGTGCTCTTGCAACAATAATACTGTGCACCTCTATGATCTGCCATCCTTCGCAGAGAGAGGCAAGATTTTTACAAAGCAAGAGGTTCGAGCTATTGAGGTTGGCCCTGGTGGCTTATTCTTCACTGGTGATGGAACAGGTCAAGTGAAAGTCTGGAATTGGTTGCCAGAGGCAGCTTCTTCACATCCAATAAATGGCGGCTCTTAA 1287 0.4476 MDVDGGNKRVFQRLRGPPPDARQQKVCFHWQAGRCNRYPCPFLHSESPPPNANGMSSKRSHGSSDDSGFSGPRRNPNFSGSSTWGGVRGVNKLIRKTEKLCNYWVQGKCSYGDSCKYLHSWSVGDGFSLLTQLEGHQKVVTGISLPSGSDKLYTGSKDETVRLWDCQSGQCLAVINLGCEVGCMIVEGPWLFVGMPNFVKAWNIQTSGELSLSGPAGQVYTLAVGNNMLFAGTQEGSILAWKFNAATNTFEPVTSLLGHSGPVVSFVVGANRLYSGSMDKTIRVWNLETLQCLQTLTGHTSVVMSVLCWDQFLLSASLDKSVKVWVATESGNLEVTYTHNEEDGVLKLCGMHDSQGKPILLCSCNNNTVHLYDLPSFAERGKIFTKQEVRAIEVGPGGLFFTGDGTGQVKVWNWLPEAASSHPINGGS 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2696 428 ProSitePatterns Trp-Asp (WD) repeats signature. 273 287 IPR019775 -
Alju01g2696 428 SMART c3hfinal6 21 46 IPR000571 GO:0046872
Alju01g2696 428 SMART c3hfinal6 97 121 IPR000571 GO:0046872
Alju01g2696 428 MobiDBLite consensus disorder prediction 1 22 - -
Alju01g2696 428 ProSiteProfiles Zinc finger C3H1-type profile. 21 47 IPR000571 GO:0046872
Alju01g2696 428 ProSiteProfiles Zinc finger C3H1-type profile. 95 122 IPR000571 GO:0046872
Alju01g2696 428 FunFam Zinc finger CCCH domain-containing protein 48 121 211 - -
Alju01g2696 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 256 289 - -
Alju01g2696 428 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 133 165 - -
Alju01g2696 428 PANTHER - 38 419 IPR044715 -
Alju01g2696 428 PRINTS G protein beta WD-40 repeat signature 273 287 IPR020472 -
Alju01g2696 428 PRINTS G protein beta WD-40 repeat signature 152 166 IPR020472 -
Alju01g2696 428 PRINTS G protein beta WD-40 repeat signature 313 327 IPR020472 -
Alju01g2696 428 Gene3D - 19 123 - -
Alju01g2696 428 SUPERFAMILY WD40 repeat-like 127 416 IPR036322 GO:0005515
Alju01g2696 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 133 174 IPR001680 GO:0005515
Alju01g2696 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 256 295 IPR001680 GO:0005515
Alju01g2696 428 SMART WD40_4 289 326 IPR001680 GO:0005515
Alju01g2696 428 SMART WD40_4 205 242 IPR001680 GO:0005515
Alju01g2696 428 SMART WD40_4 249 286 IPR001680 GO:0005515
Alju01g2696 428 SMART WD40_4 126 165 IPR001680 GO:0005515
Alju01g2696 428 SMART WD40_4 330 373 IPR001680 GO:0005515
Alju01g2696 428 SMART WD40_4 376 413 IPR001680 GO:0005515
Alju01g2696 428 Gene3D - 293 427 IPR015943 GO:0005515
Alju01g2696 428 FunFam Zinc finger CCCH domain-containing protein 48 213 421 - -
Alju01g2696 428 Gene3D - 124 292 IPR015943 GO:0005515
Alju01g2696 428 SUPERFAMILY CCCH zinc finger 96 120 IPR036855 GO:0046872
Alju01g2696 428 MobiDBLite consensus disorder prediction 49 83 - -
Alju01g2696 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 296 325 IPR001680 GO:0005515
Alju01g2696 428 MobiDBLite consensus disorder prediction 46 83 - -
Alju01g2696 428 Pfam WD domain, G-beta repeat 291 325 IPR001680 GO:0005515
Alju01g2696 428 Pfam WD domain, G-beta repeat 129 165 IPR001680 GO:0005515
Alju01g2696 428 Pfam WD domain, G-beta repeat 251 286 IPR001680 GO:0005515
Alju01g2696 428 Pfam Zinc finger domain 101 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2696 Alju-ChrAlju01 27409300 27416187 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2696 127 336 Acyl Lipid Metabolism Gene Families AT3G18860 24.229 2.14e-11 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g2696 WD40 8.4e-05 CL0186