LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g2680	ATGAAAGTGGAAAACTGCAAAAGGAAGCGATTTGACAGCCACTGGTTCTTCGGCCTGAGAATAAATCAATCCAAAGTAGCTAGCAACAGCTCTGAATCTAGGGTTTCTTCTTCCTCCTACGGAGATATGGGAAGAGGGAAGATAGAGATAAAAAGAATAGAAGAAGCAAGTAGCAGGCAAGTGACGTTTTCAAAGAGAAGAAAAGGGCTTATGAAGAAAGCCTACGAGCTATCAGTCCTGTGTGAAGCCCAAGTAGCAGTAGTTGTCTTTTCACAAAAAGGCAAACTCTATGAGTTCTTCAGTTCTGAGTACGTTCTAGCTCCTTCCAACATTCTGCTCTCTACTTCCTTATTAAATGCTTTTTTCTTTGCACGTTAA	378	0.4101	MKVENCKRKRFDSHWFFGLRINQSKVASNSSESRVSSSSYGDMGRGKIEIKRIEEASSRQVTFSKRRKGLMKKAYELSVLCEAQVAVVVFSQKGKLYEFFSSEYVLAPSNILLSTSLLNAFFFAR	125

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g2680	125	PRINTS	MADS domain signature	45	65	IPR002100	GO:0003677\|GO:0046983
	Alju01g2680	125	PRINTS	MADS domain signature	80	101	IPR002100	GO:0003677\|GO:0046983
	Alju01g2680	125	PRINTS	MADS domain signature	65	80	IPR002100	GO:0003677\|GO:0046983
	Alju01g2680	125	SMART	madsneu2	43	102	IPR002100	GO:0003677\|GO:0046983
	Alju01g2680	125	ProSiteProfiles	MADS-box domain profile.	43	103	IPR002100	GO:0003677\|GO:0046983
	Alju01g2680	125	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	52	99	IPR002100	GO:0003677\|GO:0046983
	Alju01g2680	125	SUPERFAMILY	SRF-like	43	103	IPR036879	GO:0003677\|GO:0046983
	Alju01g2680	125	PANTHER	SERUM RESPONSE FACTOR HOMOLOG	43	102	-	-
	Alju01g2680	125	Gene3D	-	56	115	IPR036879	GO:0003677\|GO:0046983
	Alju01g2680	125	CDD	MADS_MEF2_like	44	102	IPR033896	GO:0000977\|GO:0045944

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g2680	Alju-ChrAlju01	27022812	27023942	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g2680	43	103	MADS-box Gene Family	AT5G62165	72.131	9.90e-28	98.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-M-type	Alju01g2680		SRF-TF	2.1e-26	No_clan