Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2679 ATGGAGATGGGAAGAGGGAAGATAGAGATAAAAAGAATAGAAGAAGCAAGTAGCAGGCAAGTGACGTTTTCAAAGAGAAGAAAAGGGCTTATGAAGAAAGCCTACGAGCTATCAGTACTGTGTGATGCCCAAGTAGCTGTAGTTGTCTTTTCACAAAAAGGCACACCCTATGATTTCCTCAGTTCTGAGTACGTTCTAGATACTTCCAATATTCTTCTCTCCACTTTTCCTTATTAA 237 0.3966 MEMGRGKIEIKRIEEASSRQVTFSKRRKGLMKKAYELSVLCDAQVAVVVFSQKGTPYDFLSSEYVLDTSNILLSTFPY 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2679 78 CDD MADS_MEF2_like 4 62 IPR033896 GO:0000977|GO:0045944
Alju01g2679 78 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Alju01g2679 78 SUPERFAMILY SRF-like 3 65 IPR036879 GO:0003677|GO:0046983
Alju01g2679 78 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Alju01g2679 78 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Alju01g2679 78 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Alju01g2679 78 Coils Coil 78 78 - -
Alju01g2679 78 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Alju01g2679 78 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 59 IPR002100 GO:0003677|GO:0046983
Alju01g2679 78 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 62 - -
Alju01g2679 78 Gene3D - 16 73 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2679 Alju-ChrAlju01 26832901 26833522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2679 3 63 MADS-box Gene Family AT5G62165 70.492 1.09e-27 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Alju01g2679 SRF-TF 1.5e-26 No_clan