Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2671 ATGGGAAGAGGAAGAGTGGTTCTGGAGAGAATAGAGAACAAGATCAACAGACAAGTTACATTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCTTACGAGCTTTCTGTGTTGTGCGATGCTGAGATCGCTCTCATTATCTTTTCAAGCCGTGGAAAGCTTTTCCAGTACAGCAGCTCTGACTTAAACAGAACCATAGAGCGGTATCGTCAAAGTTGTTACGTCTCACACGCTCACGAGCTTGTTGAACATGAATCTCAGAACTTGTACCAGGAGCTTTTGAGATTAAAAGTCAACCATGAATCCCTTGAGAAGACACAAAGGCATCTGCTGGGAGAAGATCTTGAGCCACTAAACATGAAGGAATTGCATAATCTTGAGAAACAACTCGACAAAACCCTCACACAAGCACGACAGCGCAAGAACCAGAAGATGATGGAACGAGTCGACGAGTTACGCAAGAAGGGACACGAACTAGAGGAGGTTAACAAACAACTCAAGTACAAGCTTCAAGAAATATATGAACCTAGCCAAACCGCAGAAGATGTTGAAGTCCAATCAGCCACAAATCAGAGCTCCTTACCAATATGGCATGGGCAGAAGGAAGCTAGCTCAAAAGGAAAGGCAATTGACACGAGGACACGGGGAGGTCAGATCATTCACAACAATAATAGCATCAACCACAACAATGGATGGCTGATTTGA 705 0.4369 MGRGRVVLERIENKINRQVTFSKRRNGLLKKAYELSVLCDAEIALIIFSSRGKLFQYSSSDLNRTIERYRQSCYVSHAHELVEHESQNLYQELLRLKVNHESLEKTQRHLLGEDLEPLNMKELHNLEKQLDKTLTQARQRKNQKMMERVDELRKKGHELEEVNKQLKYKLQEIYEPSQTAEDVEVQSATNQSSLPIWHGQKEASSKGKAIDTRTRGGQIIHNNNSINHNNGWLI 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2671 234 Gene3D - 13 80 IPR036879 GO:0003677|GO:0046983
Alju01g2671 234 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 177 - -
Alju01g2671 234 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Alju01g2671 234 Coils Coil 120 169 - -
Alju01g2671 234 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Alju01g2671 234 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Alju01g2671 234 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Alju01g2671 234 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju01g2671 234 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Alju01g2671 234 Coils Coil 86 106 - -
Alju01g2671 234 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Alju01g2671 234 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Alju01g2671 234 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Alju01g2671 234 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Alju01g2671 234 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Alju01g2671 234 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2671 Alju-ChrAlju01 26492179 26502574 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2671 1 195 MADS-box Gene Family AT2G45650 54.872 2.61e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Alju01g2671 K-box 5.1e-24 No_clan