Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2637 ATGCCTTCTCTTCCTGTCTCTGATGTTACTTATTCCGAGACTCCCAAGGATAAGAAGGAGAAGAAGAAGAAGATGAAGAACGAGGACCTAATTGAAGATGCGGTTTCGGCGAAGAAGAAGAAGAAGGAAAGCAAGAAGCGTAAAGCTCTGGATGTTGAGACGATGGGGAGTGAGGATGAGGCAAAGAGTGAGACGAGTTCCGAGTTGGTTGAGCCTGATAGTGTGAAAGAAAAGAGGAAGAAGAAAAAGGCTAAGGTGGATGAACCTGAAGATAAAGAGGAAGAGGTTGAGAAGGAGAACCCTAATGCTATTTCGAACTTTAGGATATCGGCGCCGTTGAGGGCGAAGTTGAAAGAGAAGGGGATTGAATCGCTATTTCCTATTCAGGCCATGACTTTTGATACCATCCTATACGGCTCTGATTTGGTTGGTCGGGCTCGCACTGGGCAGGGTAAAACTCTTGCCTTTGTGTTACCGATATTAGAATCTTTAACAAATGGTCCTGCAAAAGCAGCGAGAAAGTCTGGATATGGAAGGTCTCCATGTGTTCTTGTGCTCTTGCCTACCAGAGAATTGGCCAAACAGGTAGCTTCTGATTTTGAAGTTTATGGTGGGGCACTGGGATTGACCTCTTGTTGTTTATATGGTGGAGCTCCATATCAATCACAAGAATTTAAACTCAAGAAGGGTGTTGATGTTGTTGTTGGAACTCCAGGACGCATAAAAGATCATATCGAGAGGAACAATCTTGACCTGAGCCAACTAAAGTTCCGTGTCCTGGATGAAGCAGATGAGATGCTGAGGATGGGTTTTGTCGAAGATGTTGAACTCATTTTGGGTAAGGTAGAGGATGTTAGTAAAGTTCAGACACTTCTTTTCAGTGCTACTTTGCCAAGCTGGGTTAAGAGTATTTCTATGAAATTTCTGAAATCTGATAGAAGGACTGCTGACCTGGTGGGCAATGAGAAAATGAAAGCTAGCACTAATGTTAGGCATATTGTTCTCCCGTGTTCTAGTACTGCCAGGTCTCAGCTTATTCCAGATGTTATACGTTGCTATTGCAATGGAGGCCGGACAATTATATTTACTGAGACAAAGGAGTCTGCTTCTGAGCTAGCAGGGTTGTTGCCTGGTGCACGAGCTCTGCATGGTGATATACAACAGTCACAGCGTGAGGTCACCTTGGCTGGTTTCAGGGCTGGGAAGTTTGCTACATTAGTGGCCACTAATGTGGCGGCCCGTGGTTTGGACATTAATGATGTTCAGTTAATTATTCAGTGTGAACCCCCACGTGATGTTGAAGACTATATCCATAGATCTGGGCGCACTGGAAGAGCAGGTAATACTGGAGTCGCTGTTATGCTTTATGATCCACGAAGGTCAAATATATCAAAGATAGAAAGAGAATCTGGTGTGAAATTTGAACACATATCTGCTCCCCAGCCTGCTGATATTGCCAAAGCTGTTGGTGGAGATGCTGCTAAAATGATAACCCAAGTGTCTGATGATGTCATTCCTGCATTCAAGTCTGCTGCGGAGGATCTTTTAGACAATTCAGGCTTAACAGCTGTTGAATTACTTGCAAAAGCTCTTGCCAAGACTATTGGTTATACGGAGATAAAGAAAAGATCACTACTCAGTTCCATGGAGGACCATGTCACATTACTTCTTGAGATTGGAAGACCCGTCTACACCCCTTCATTTGCATTTGGAATTTTGAGGAGATTCTTGCCTCAGGAGAAGGTAGACTCAGTGAAGGGTCTTACTCTCACTGCAGATGGAAATGGTGCTGTTTTTGATGTGTCAGCTGAAGACTTGGATACCTTTCTTACTGGTTCTGAAAACGCTGCTAATGTAAGTTTAGTAGTATTGGAAGCATTGCCAAGTTTGCAAGAAAGAGAGCAATCAAGAGGTAGATTTGGCGGCGGTCGCGGCGGTAACAGGTTTTCCGGTGGAAGGGGTGGTGGCAGATTTTCTAATGATAGAAATGGTAGGTTTTCCAATAATTCTGGAGGCGGCAGAGGTCGTGGCAACTCTGGGGCAAAGAGGTGGTGA 2055 0.4443 MPSLPVSDVTYSETPKDKKEKKKKMKNEDLIEDAVSAKKKKKESKKRKALDVETMGSEDEAKSETSSELVEPDSVKEKRKKKKAKVDEPEDKEEEVEKENPNAISNFRISAPLRAKLKEKGIESLFPIQAMTFDTILYGSDLVGRARTGQGKTLAFVLPILESLTNGPAKAARKSGYGRSPCVLVLLPTRELAKQVASDFEVYGGALGLTSCCLYGGAPYQSQEFKLKKGVDVVVGTPGRIKDHIERNNLDLSQLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPSWVKSISMKFLKSDRRTADLVGNEKMKASTNVRHIVLPCSSTARSQLIPDVIRCYCNGGRTIIFTETKESASELAGLLPGARALHGDIQQSQREVTLAGFRAGKFATLVATNVAARGLDINDVQLIIQCEPPRDVEDYIHRSGRTGRAGNTGVAVMLYDPRRSNISKIERESGVKFEHISAPQPADIAKAVGGDAAKMITQVSDDVIPAFKSAAEDLLDNSGLTAVELLAKALAKTIGYTEIKKRSLLSSMEDHVTLLLEIGRPVYTPSFAFGILRRFLPQEKVDSVKGLTLTADGNGAVFDVSAEDLDTFLTGSENAANVSLVVLEALPSLQEREQSRGRFGGGRGGNRFSGGRGGGRFSNDRNGRFSNNSGGGRGRGNSGAKRW 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2637 684 CDD GUCT_RH7_like 543 628 - -
Alju01g2637 684 CDD SF2_C_DEAD 330 456 - -
Alju01g2637 684 SMART ultradead3 121 333 IPR014001 -
Alju01g2637 684 MobiDBLite consensus disorder prediction 46 100 - -
Alju01g2637 684 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 133 315 IPR014001 -
Alju01g2637 684 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 459 IPR027417 -
Alju01g2637 684 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 259 267 IPR000629 -
Alju01g2637 684 SMART helicmild6 370 447 IPR001650 -
Alju01g2637 684 MobiDBLite consensus disorder prediction 634 684 - -
Alju01g2637 684 Gene3D - 327 553 IPR027417 -
Alju01g2637 684 FunFam DEAD-box ATP-dependent RNA helicase 7 553 625 - -
Alju01g2637 684 Pfam GUCT (NUC152) domain 536 631 IPR012562 GO:0003723|GO:0004386|GO:0005524
Alju01g2637 684 Pfam Helicase conserved C-terminal domain 355 447 IPR001650 -
Alju01g2637 684 MobiDBLite consensus disorder prediction 12 39 - -
Alju01g2637 684 MobiDBLite consensus disorder prediction 1 100 - -
Alju01g2637 684 SUPERFAMILY RNA-binding domain, RBD 540 623 IPR035979 GO:0003676
Alju01g2637 684 Gene3D - 554 625 - -
Alju01g2637 684 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 58 500 - -
Alju01g2637 684 Coils Coil 27 47 - -
Alju01g2637 684 Gene3D - 52 315 IPR027417 -
Alju01g2637 684 Pfam DEAD/DEAH box helicase 126 303 IPR011545 GO:0003676|GO:0005524
Alju01g2637 684 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 345 486 IPR001650 -
Alju01g2637 684 CDD DEADc 113 310 - -
Alju01g2637 684 MobiDBLite consensus disorder prediction 661 675 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2637 Alju-ChrAlju01 25805692 25810201 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2637 139 486 Eukaryotic Initiation Factors Gene Family AT1G72730 31.161 1.85e-41 154