Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2620 ATGGAAGAAAAAGATAGTTTTTTCTCCGGGCTTACCGTGAAGGCTAACGATGTTCCGGAAAGTCACCATGTAACTCCGAGAAGTGAAAACTATGGACTCTTTGGCGGGCCCACAGGGGCATCGCCAGCCCCGGTGCCAGCACCAGCTCCGACTACGGCTCCAACTTCATCTCCGGCTTCAGCTAGAGCTCCGGTGCCAGTTTCAGTTTCGGCGCCGGAGCCGGTGAGTGTGGCTGCGGCGACAGGGAGTACGGATGTAGTAAAGAAGAAAAGGGGAAGGCCTAGGAAGTACGGGCCTGATGGTAAATTAGCGTTGGCGTTGTCGCCGATGCCGATTTCGTCTTCAATTCCGTTGACTGGGGACTTCCCAATGTGGAAACGAGGTAGAGGACGGCCAGTTGAATCCGTCAAGAAGTCGTTTAAGTGCGATTTTGAAAGCCCTGGACCAGGTGATGGGATTGCATACTCAGTTGGTGCCAATTTCACACCCCATGTGCTTACTGTTAAAGCTGGCGAGGATGTTAATATGAAGGTCATGTCCTTCTCTCAACAGGGATCTCGTGCTATTTGTATTCTTTCTGCAAATGGAACAATTTCAAATGTTACACTGCGTCAACCAACTTCTTCTGGGGGTACCTTAACATATGAAGGACGATTTGAGATTCTTTCTTTGTCTGGTTCGTATATGCCTTCTGAGAATGGTGTGACTAGAAGTAGATCTGGTGGGATGAGTGTCTCTTTGGCCGGCCCAGATGGTCGAGTCGTGGGAGGCGGCCTTGCTGGTCTGTTGGTAGCAGCAGGTCCTGTGCAGGTTGTTGTGGGAAGTTTTCTTCCAGGCCACCAGCAGATGCAGAAACCCAAGAAACAAAAGACGAATCATTTTTCGCCTGTCACATCTGGACATTATAATCCCATCCCAGTTGACGAAATAAAAATCAGCTTCGGTGGAGTAAAGCCCATTATGACTCCTGCTGCATTTCAAGCCGCGGACAACAACAACAACAACAACATCACCGCGTCTTTTAACAACATCCAGGGCTCTAGCAACTCATCTGCTGATGACGACGACGCTGATGCTGATGACGATGACGACGATACACTTTATCCTGAAAAGAACTCTTAA 1122 0.4929 MEEKDSFFSGLTVKANDVPESHHVTPRSENYGLFGGPTGASPAPVPAPAPTTAPTSSPASARAPVPVSVSAPEPVSVAAATGSTDVVKKKRGRPRKYGPDGKLALALSPMPISSSIPLTGDFPMWKRGRGRPVESVKKSFKCDFESPGPGDGIAYSVGANFTPHVLTVKAGEDVNMKVMSFSQQGSRAICILSANGTISNVTLRQPTSSGGTLTYEGRFEILSLSGSYMPSENGVTRSRSGGMSVSLAGPDGRVVGGGLAGLLVAAGPVQVVVGSFLPGHQQMQKPKKQKTNHFSPVTSGHYNPIPVDEIKISFGGVKPIMTPAAFQAADNNNNNNITASFNNIQGSSNSSADDDDADADDDDDDTLYPEKNS 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2620 373 MobiDBLite consensus disorder prediction 81 102 - -
Alju01g2620 373 Pfam Plants and Prokaryotes Conserved (PCC) domain 163 276 IPR005175 -
Alju01g2620 373 MobiDBLite consensus disorder prediction 337 352 - -
Alju01g2620 373 ProSiteProfiles PPC domain profile profile. 158 297 IPR005175 -
Alju01g2620 373 FunFam AT-hook motif nuclear-localized protein 1-like 163 294 - -
Alju01g2620 373 CDD DUF296 162 276 IPR005175 -
Alju01g2620 373 MobiDBLite consensus disorder prediction 282 299 - -
Alju01g2620 373 MobiDBLite consensus disorder prediction 281 300 - -
Alju01g2620 373 Gene3D - 163 294 - -
Alju01g2620 373 MobiDBLite consensus disorder prediction 337 373 - -
Alju01g2620 373 MobiDBLite consensus disorder prediction 353 367 - -
Alju01g2620 373 MobiDBLite consensus disorder prediction 1 65 - -
Alju01g2620 373 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 53 342 IPR039605 GO:0003680
Alju01g2620 373 SMART AT_hook_2 126 138 IPR017956 GO:0003677
Alju01g2620 373 SMART AT_hook_2 88 100 IPR017956 GO:0003677
Alju01g2620 373 SUPERFAMILY AF0104/ALDC/Ptd012-like 160 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2620 Alju-ChrAlju01 25540030 25543764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2620 70 341 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 56.537 9.35e-92 279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g2620 01 25540030 25543764 Alju01g2620 01 25540030 25543764 ECH