Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2593 ATGCCTGCCATGAAGAAGGTTGTTAATTCTGAGCTGACTCGGTTAGGTTCTGTATTCAACAAGTTGGTGAATGAGATAGGAGATCCTGTTGATTTTGAACTTCCAGATTGGCTTAATAAGTGGAAGGCAGTGCCATACGTCTCTATAAAGCGCAATATATATCTCAGAAAGAAGGTAAAGAGAAGGCTTGATGATGATGGCATATTCTGTTCTTGTACTGCATCCCCTGGGTCTTCTAGTGTTTGTGGTAAATACTGTCACTGTGGGATGCTTATGTCTAGCTGCTCTTCAGGCTGTAAATGTGGGAATTCTTGTCTCAATAAACCATTTCAGCATCGACCTACAAAAAAGATGAAATTGGTTCAGACTGAGAAGTGTGGTTCTGGAATTGTGGTGGATGAAGATATCAAGCAAGGGGACTTTGTCATTGAATATGTTGGAGAAGTCATTGATGACAAAACATGTGAAGAAAGGCTTTGGAATATGAAACATCGTGGGGAGACGAACTTCTACTTATGTGAAATTAACAGAGATATGGTGATTGATGCAACATATAAGGGGAACAAATCAAGATACATAAATCATAGTTGCTGCCCCAATACAGAGATGCAGAAATGGATAATTGATGGTGAAACAAGAATTGGCATATTTGCAACGCGTGACATAGCGAAGGGCGAGCATCTTACTTATGATTATCAGTTTGTTCAATTTGGTGCAGATCAAGATTGCCACTGTGGTGCTGCTGTGTGCAGGCGTAAGTTGGGGGCCCGATCTACCAAGCCTAAAACATCATCAGATGCATATCAGGTGGATGCATATTCTCTAGTTAATCAGAATGGAGGTTTGCATATTGGACATTCTCATGCTATCGGTGCACCAAAGTACACGCACAATTGCATTGGAGAAGTTATCAGGATAAATCACCCCACAAAACAGAGGTGGTGTTTTGGGATGATAAAGCAGTTCGATAAATATTCCCAAAAACACACTATTATGTTTGAAGATAGTGATGCTGACTTTATTGACTTGTCAAAAGTAGATTGGGAACTTGTGAGATTGTGA 1062 0.4021 MPAMKKVVNSELTRLGSVFNKLVNEIGDPVDFELPDWLNKWKAVPYVSIKRNIYLRKKVKRRLDDDGIFCSCTASPGSSSVCGKYCHCGMLMSSCSSGCKCGNSCLNKPFQHRPTKKMKLVQTEKCGSGIVVDEDIKQGDFVIEYVGEVIDDKTCEERLWNMKHRGETNFYLCEINRDMVIDATYKGNKSRYINHSCCPNTEMQKWIIDGETRIGIFATRDIAKGEHLTYDYQFVQFGADQDCHCGAAVCRRKLGARSTKPKTSSDAYQVDAYSLVNQNGGLHIGHSHAIGAPKYTHNCIGEVIRINHPTKQRWCFGMIKQFDKYSQKHTIMFEDSDADFIDLSKVDWELVRL 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2593 353 ProSiteProfiles SET domain profile. 116 233 IPR001214 GO:0005515
Alju01g2593 353 SMART shorttest3 65 115 IPR006560 GO:0005634|GO:0042054
Alju01g2593 353 SMART set_7 116 239 IPR001214 GO:0005515
Alju01g2593 353 Gene3D SET domain 36 272 IPR046341 -
Alju01g2593 353 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 39 298 IPR025787 -
Alju01g2593 353 SUPERFAMILY SET domain 41 251 IPR046341 -
Alju01g2593 353 FunFam Histone-lysine N-methyltransferase 32 271 - -
Alju01g2593 353 CDD SET_ASHR3-like 117 255 - -
Alju01g2593 353 Pfam SET domain 127 232 IPR001214 GO:0005515
Alju01g2593 353 ProSiteProfiles AWS domain profile. 65 114 IPR006560 GO:0005634|GO:0042054
Alju01g2593 353 SMART PostSET_3 239 255 IPR003616 -
Alju01g2593 353 PANTHER SET DOMAIN PROTEINS 31 333 - -
Alju01g2593 353 CDD Tudor_Agenet_AtEML-like 300 350 - -
Alju01g2593 353 ProSiteProfiles Post-SET domain profile. 239 255 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2593 Alju-ChrAlju01 24979141 24984397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2593 89 251 C2H2 Transcription Factor Family AT2G23740 34.426 5.41e-23 99.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Alju01g2593 SET 5.4e-18 No_clan