Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2591 ATGGTCGTTTGCGGTGGGAAGCCATTAAAGCGGATGAAGAGGAGAGTCACGGCTGATTTCTACGATTTTCTCACGTTCCCGTCCCCTTCAGTCGCTGGAGAAGATTTCTCCGGTGGACCCTTCCGGACGAACGTGAGATCTTTCCTATCGAAGCACGCGCTTCTCCCACCGCCTTCGGCTCTGTTCCCTCACCTCATGACGTGGCAGATTCTGTTCCGAGTCGGTGATCTGACGGACGGCTCGGAATCGAGTCCAGCGGTGGTGTGCCTCGACGTTGTCGAAGAGGATGTGGTCAGATCTAGATCCGTCTACTGCGATCAGTGCCGAGTTGTTGGTTGGAGTGGCCATCCAGTATGTGGAAAACGGTACCATTTTATTATCAAGGCTGATGGTACTTCCATTGGTGGGTACCACAAGCCATGTATGTGCTGTGGAGACATCTTGCACTTGTCAGAATCCAAGTGCAAGTCATGCAACCATGTGACGAGTACGGATGATGTTGAAGATTGGGTCTATCACCAGTTAGAAAGCACAACTCATCTTTTACATGGTGTAGTCCATGCTAATGGTTATGGTCACCTTCTTCGAGTTAATGGCAGAGAAGGTGGCTCAAAATTTCTTTCTGGGTGCCATACCATGGACTTCTGGGATCGCCTCTGCCAGACACTTGGAGTTAGAAAAGTTAGCGTGATGGATGTGTCGAAGAAGTATGGGTTGGAGTACCGGCTGCTTCATGCTATTACTAAAGGACATCCTTGGTATGGTCATTGGGGTTATCAATTTGGTTCTGGTAGCTATGGTCTTACACATGAATCATACAAGTCTGCTGTAGAATTCCTGTCCAATATGCCCTTGTCCGCCTTTCTTTCCCCGGGGCAGAAATGTGATTCTCATGTACAAGACATGATATCATATTACCAGTCTTTGTCAAAGAATGAGCTTGTAAATATAAGGGACCTCTTTTGTTTTTTACTGGGTTTGATTCATGATGCTCGCAAGACTGCTGCATCAAAGAATGTTGATGACATCACTGGTAAGAAGCGACGTGTGAATGCTACAGGAGTGTCTTCATGGACTAAGAGTGACGTTGAATGTGTGGAGGAGGCCATGCTCAGAGTGCTGCGAGCTGTGTCTGGATCCAATTGGGTGAGCTGGCGTGCTCTAAGGGGTGCTGTCTGCAAGGTAGCTTCTCCAGAACTGCTTGATCACTGCCTCGGAGAATTGGGAGGAAAAGTGGTCCTTGGTGCAATGGTGAATACCCGATGCAATCCTGTTACTGGTGCTTTTGAGTACAGACTAGAGACAGTGAAGAATTCTCGCAATGAAATTGCAAGCAACATTTCTTCAGGCCTTAAGTATCCATCTGAAGTGACTCTTCTCCATGACTTGAGATACTTTTATAATTCCCTTCTTCATCCTCAGATGATGTTGAGCTATGATCCAGGGGAGACAAGGGCAATTGCCATGAGCTCTGCTCAGAAACTTATTGACTGCAAGCAGTTTGTAAAGGACTTTAAACCCGAGACATTGCCACTGACAAACCCGTCTAAGATACGCTTCTCATGTCAAATAGAAATAGAAGATGAATCTGAAGATTTTGCCACACACCTTCCTCCAGAATTAGTTATCCTCCCTGTAAATGCCACCATATCTGAGCTCAAGCTTGAAGCGGCAAATGCTTTTCAAGATGTATATGTCATGTTCAGAAGACTTCAAATTGATGCGCTACTTGGCTATAATGTCGATGATTCCTCCCAGGTCAAGCACTTGTCTGGGTCTATGTTCAACGCAGTCCGTCTGCGAGGAAAATGCACTGGCAAGAATGGATTGAGCAGATTCCAAATGGAACGGGGCACTGAGAGGTGGACTGTGGATTGTAGCTGTGGGGCCAAGGACGATGATGGCGAGAGAATGTTGGCTTGTGACATATGTGGAGTGTGGAGACACACAAGGTGCTCTGGTATTCATGACGCAGATCCTGTACCTGCACGGTTTGTTTGTCCAAAGTGCCAAAACTTTGACCCCAAACCCAAACCTAATGGACCCTGCGAGGATGACACTGTGAATGGTATTACCGCTAACAAGAACTGCTTGCTGGTGCCATCTGATGTTCGTTGA 2118 0.4703 MVVCGGKPLKRMKRRVTADFYDFLTFPSPSVAGEDFSGGPFRTNVRSFLSKHALLPPPSALFPHLMTWQILFRVGDLTDGSESSPAVVCLDVVEEDVVRSRSVYCDQCRVVGWSGHPVCGKRYHFIIKADGTSIGGYHKPCMCCGDILHLSESKCKSCNHVTSTDDVEDWVYHQLESTTHLLHGVVHANGYGHLLRVNGREGGSKFLSGCHTMDFWDRLCQTLGVRKVSVMDVSKKYGLEYRLLHAITKGHPWYGHWGYQFGSGSYGLTHESYKSAVEFLSNMPLSAFLSPGQKCDSHVQDMISYYQSLSKNELVNIRDLFCFLLGLIHDARKTAASKNVDDITGKKRRVNATGVSSWTKSDVECVEEAMLRVLRAVSGSNWVSWRALRGAVCKVASPELLDHCLGELGGKVVLGAMVNTRCNPVTGAFEYRLETVKNSRNEIASNISSGLKYPSEVTLLHDLRYFYNSLLHPQMMLSYDPGETRAIAMSSAQKLIDCKQFVKDFKPETLPLTNPSKIRFSCQIEIEDESEDFATHLPPELVILPVNATISELKLEAANAFQDVYVMFRRLQIDALLGYNVDDSSQVKHLSGSMFNAVRLRGKCTGKNGLSRFQMERGTERWTVDCSCGAKDDDGERMLACDICGVWRHTRCSGIHDADPVPARFVCPKCQNFDPKPKPNGPCEDDTVNGITANKNCLLVPSDVR 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2591 705 ProSitePatterns Uncharacterized protein family UPF0054 signature. 183 193 IPR020549 -
Alju01g2591 705 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 13 680 - -
Alju01g2591 705 SMART PHD_3 625 671 IPR001965 -
Alju01g2591 705 CDD PHD_MMD1_like 625 670 - -
Alju01g2591 705 Pfam PHD-finger 626 672 IPR019787 -
Alju01g2591 705 SUPERFAMILY FYVE/PHD zinc finger 615 672 IPR011011 -
Alju01g2591 705 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 610 674 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2591 Alju-ChrAlju01 24966584 24971787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2591 84 670 PHD Transcription Factor Family AT5G22260 30.757 1.09e-89 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Alju01g2591 PHD 1.8e-08 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g2591 01 24966584 24971787 Alju01g2591 01 24966584 24971787 ECH