Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2580 ATGGAGAACGAAAATCATGTGAATCATGGCGAAGTTGGGAATGACATAGAAAACGAAGCTCCCTTAGATGGGAATGGCAATAGGAGATACTGGTCAGAGTTTTCTGAAAGAAACATGCCATACACAGAGCCACTTCTGGTGAAGAGGACTAACACCACCTCGCAGATCGCCATAGTTGGTGCCAACCTTAGCCCCATTGAAAGTCTTGACTATGAGATGTTTGAGAATGAAATATTTAAGCAGGACTGGAGATCAAGGGGAAAGATTCAGATATTCCAGTATGTGATACTTAAATGGGGATTTGCTGCTCTTATTGGACTAGGAACTGGGCTACTTGGCTTCTTCAGTAATATTGCCGTTGAGAATATTGCTGGTTTCAAGCTGCTTCTGGTATCCGATCTCATGTATAAACAAAGATATATTCTAGCATTTGTAGCATTAGCTGGTTGCAATGTAGCTTTAGCGGCGGCGGCTGCATCTCTCTGTGCTTTCATTGCTCCAGCAGCAGCAGGCTCTGGTATTCCTGAGGTAAAAGGCTACCTCAATGGTATTGATGCTCACAGTATACTGGCTCCAAGCACTCTTTTTGTGAAGGTTTTTGGTTCCATCCTTGGAGTTTCTGCTGGATTTGTGGTGGGCAAAGAGGGGCCTATGGTACACACAGGTGCATGCCTTGCCTCCTTGTTAGGCCAGGGTGGATCCCGCAAGTATCACTTAACTTGGAACTGGCTAAGGTATTTCAAAAATGATCGGGACCGGCGGGACATGATTACTTGTGGTGCTGCAGCTGGTGTTGCTGCTGCATTTCGTGCTCCCGTAGGTGGTGTTCTCTTTGCCCTTGAAGAGGCAGCTTCATGGTGGCGGAGTGCTCTACTTTGGAGGACATTTTTCACTACAGCTGTAGTTGCTATTGTTTTGAGAGCCGGAATTCAGTACTGTGCCACTGGGAAATGTGGGCTATTTGGCGAGGGTGGTTTGATAATGTACGATGTCAGTGCAGCCAATGTAACATACACTGGTGCTGATATACTAGCAGTGTTACTGTTAGGAACCCTCGGAGGCGTTCTCGGAAGCATATATAATTACTTTGTGGATAAGGTTGTTCGTACATATAGCATCCTGAATGAAAAAGGTCCAGGTTTCAAGATTCTCATTGTTGTCACAATTGCTTTCTTGACATCATGTTGTGCTTACGGCCTACCATGGTTGGTGACGTGCATCCCTTGTCCTGATGATCCGTCGGTGAGCTGTCCCACTGTCTATGACTCTGGCAACTACAAGAACTTCCATTGTCCGCCAGGACATTACAATGATCTCGCTTCTCTTTTCCTAAACACCAACGATGATGCTATTCGCAACCTATTCAGTACCAGGACATTCAAGGAGTTCCACATCTCCAGTCTCTTTATCTTCTTTGCAGCTATTTATGTTCTTGGGGTTGTCACATATGGTATTGCTGTTCCGTCTGGGCTTTTCATTCCTGTGATATTGGCTGGCGCTGCGTATGGCCGGCTCGTTGGCAGACTATTTGAATCAATTTCAAAGCTTGATACCGGTCTATATGCCCTCCTTGGAGCTGCCTCTTTCCTTGGTGGCACCATGAGGATGACAGTGTCCCTTTGTGTTATATTGCTAGAACTCACCAATGATCTCTTGTTACTTCCTCTTGTGATGTTGGTCTTGCTAATCTCAAAAACTGTGGCTGATAGCTTCAACAAGGGTGTCTACGATCAAATACTGAAGATCAAAGGACTTCCATATATGGAGGCCCATGCAGAACCTTATATGCGGAATTTAATCGCACGAGATGTTGTCTCTGGTCCACTTGTCACTTTCTCTGGCATTGAAAGGGTAGGGAATATACTACATGCTCTGAGAACCACGGGGCATAATGGGTTTCCTGTCATCGATGAACCACCATTCTCAGATGCACCGGAATTGTGTGGCCTTGTTCTTAGGTCTCATCTGCTAGTGCTATTGAAGGGGAAGAACTTTTCAAAAGACAAGGTGCTTACAAGTCAAAGCATCTTACAAAAACTATCTGCATTAGATTTTGCAAAGGCTGGAACAGGGAAAGGAATCAAACTAGAGGATCTAGATATTGAAGAGGAAGAGATGGATATGTATGTTGATCTCCACCCTATTTCCAATGCATCCCCATACACGGTGGTCGAGACCATGTCCCTCGCTAAAGCCGCCATTCTTTTCCGCCAACTTGGTCTTAGGCACATGTGCGTGGTCCCCAAGAGTCAACATAGACCTCCAGTTGTTGGGATTCTGACACGCCATGACTTCATGGAGGAGCATGTCCATGGACTTTACCCCAACATGAAACCTCACAGGTGGACTGAGTGTTCCAAGTGA 2364 0.456 MENENHVNHGEVGNDIENEAPLDGNGNRRYWSEFSERNMPYTEPLLVKRTNTTSQIAIVGANLSPIESLDYEMFENEIFKQDWRSRGKIQIFQYVILKWGFAALIGLGTGLLGFFSNIAVENIAGFKLLLVSDLMYKQRYILAFVALAGCNVALAAAAASLCAFIAPAAAGSGIPEVKGYLNGIDAHSILAPSTLFVKVFGSILGVSAGFVVGKEGPMVHTGACLASLLGQGGSRKYHLTWNWLRYFKNDRDRRDMITCGAAAGVAAAFRAPVGGVLFALEEAASWWRSALLWRTFFTTAVVAIVLRAGIQYCATGKCGLFGEGGLIMYDVSAANVTYTGADILAVLLLGTLGGVLGSIYNYFVDKVVRTYSILNEKGPGFKILIVVTIAFLTSCCAYGLPWLVTCIPCPDDPSVSCPTVYDSGNYKNFHCPPGHYNDLASLFLNTNDDAIRNLFSTRTFKEFHISSLFIFFAAIYVLGVVTYGIAVPSGLFIPVILAGAAYGRLVGRLFESISKLDTGLYALLGAASFLGGTMRMTVSLCVILLELTNDLLLLPLVMLVLLISKTVADSFNKGVYDQILKIKGLPYMEAHAEPYMRNLIARDVVSGPLVTFSGIERVGNILHALRTTGHNGFPVIDEPPFSDAPELCGLVLRSHLLVLLKGKNFSKDKVLTSQSILQKLSALDFAKAGTGKGIKLEDLDIEEEEMDMYVDLHPISNASPYTVVETMSLAKAAILFRQLGLRHMCVVPKSQHRPPVVGILTRHDFMEEHVHGLYPNMKPHRWTECSK 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2580 787 ProSiteProfiles CBS domain profile. 715 776 IPR000644 -
Alju01g2580 787 PRINTS Chloride channel signature 487 507 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju01g2580 787 PRINTS Chloride channel signature 198 217 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju01g2580 787 PRINTS Chloride channel signature 537 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju01g2580 787 PRINTS Chloride channel signature 519 535 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju01g2580 787 PRINTS Chloride channel signature 575 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju01g2580 787 PRINTS Chloride channel signature 167 184 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju01g2580 787 PRINTS Chloride channel signature 262 281 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju01g2580 787 CDD CBS_pair_voltage-gated_CLC_euk_bac 600 768 - -
Alju01g2580 787 Pfam Voltage gated chloride channel 155 569 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Alju01g2580 787 SMART cbs_1 719 770 IPR000644 -
Alju01g2580 787 SMART cbs_1 608 661 IPR000644 -
Alju01g2580 787 Pfam CBS domain 718 767 IPR000644 -
Alju01g2580 787 FunFam Chloride channel ClC3 90 415 - -
Alju01g2580 787 Gene3D - 589 771 IPR046342 -
Alju01g2580 787 SUPERFAMILY CBS-domain pair 592 768 IPR046342 -
Alju01g2580 787 MobiDBLite consensus disorder prediction 1 23 - -
Alju01g2580 787 SUPERFAMILY Clc chloride channel 76 590 IPR014743 -
Alju01g2580 787 Gene3D Clc chloride channel 90 588 - -
Alju01g2580 787 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 28 771 - -
Alju01g2580 787 PRINTS Plant CLC chloride channel signature 315 322 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju01g2580 787 PRINTS Plant CLC chloride channel signature 297 307 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju01g2580 787 PRINTS Plant CLC chloride channel signature 439 455 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju01g2580 787 PRINTS Plant CLC chloride channel signature 283 291 IPR002251 GO:0005247|GO:0006821|GO:0016020
Alju01g2580 787 PRINTS Plant CLC chloride channel signature 72 80 IPR002251 GO:0005247|GO:0006821|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2580 Alju-ChrAlju01 24844213 24849997 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2580 1 779 Ion Channels AT5G49890 70.807 0.0 1109