Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2578 ATGAAATTTCTCAATACGGCAACTCCGATCCTCGACACTGACTTATTTTACTACACAGCGCATAAGATGGGTGTGCATCAATTTTCAGTCCTGTGCCCTAATTTCCCTTTCTTTGCACTCTCTGCCGTTAGCTCAAAAGGAAGTTACTCTCCTCGAAATCGAATTGCTACCGTCATCTACCTCGAGCAGAAGAGAAGCGAGAGATTTCTAGGGGTTGATCGGAATTTCAGCTCATTTTCAAGTGTCTTGGGTCATAAGGTTTCTATCCTCACAAACATGGCTACTAGACTTATGTTTGAGAACTCCTGTGAAGTTGGAGTGTTCTCTAAACTTACCAATGCCTATTGTTTGGTTGCCATCGGAGGTTCTGAAAGCTTCTACAGTGTATTTGAGTCTGAATTAGCAGGTGTTATCCCTGTGGTGAAGACCTCCATCGGTGGCACTCGTATTGTTGGCCGACTTTGTGCCGGAAACAGGAATGGGCTTCTCTTGCCGCACACTACCACAGACCAAGAACTTCAACATTTGAGAAACAGTCTACCGGATCAAGTTGTTGTTCAGCGCGTAGAAGAAAGGTTATCTGCTCTTGGAAATTGTATAGCATGTAATGACCATGTGGCACTCGCGCACACTGATCTTGACCGGGAAACTGAAGAGCTGATTGCAGACGTGCTGGGAGTAGAAGTTTTCAGGCAGACCATTGCCGGAAATATTCTTGTTGGTAGTTACTGCGCCTTCTCCAACAGAGGTGGTTTGGTTCATCCTCACACTTCAATAGAAGACATGGATGAGCTCTCTACACTTCTTCAGGTTCCTCTGGTGGCTGGGACCGTGAACCGTGGCAGTGAGGTCATAGCTGCTGGCATGACTGTTAACGACTGGACTGCCTTTTGTGGATCAGACACGACTGCAACAGAACTCTCTGTGGTTGAGAGTGTTTTCAAGCTTAGGGAATCTCAACCTAGTGATATTGCGGACGAGAAGAGGAAATCGCTTATCGATACTTACGTTTAA 1014 0.4586 MKFLNTATPILDTDLFYYTAHKMGVHQFSVLCPNFPFFALSAVSSKGSYSPRNRIATVIYLEQKRSERFLGVDRNFSSFSSVLGHKVSILTNMATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSVFESELAGVIPVVKTSIGGTRIVGRLCAGNRNGLLLPHTTTDQELQHLRNSLPDQVVVQRVEERLSALGNCIACNDHVALAHTDLDRETEELIADVLGVEVFRQTIAGNILVGSYCAFSNRGGLVHPHTSIEDMDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVVESVFKLRESQPSDIADEKRKSLIDTYV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2578 337 Hamap Translation initiation factor 6 [eif6]. 82 337 IPR002769 GO:0042256|GO:0043022
Alju01g2578 337 NCBIfam translation initiation factor IF-6 96 316 IPR002769 GO:0042256|GO:0043022
Alju01g2578 337 SMART eIF6neu2 95 296 IPR002769 GO:0042256|GO:0043022
Alju01g2578 337 CDD IF6 94 315 IPR002769 GO:0042256|GO:0043022
Alju01g2578 337 Gene3D - 93 317 - -
Alju01g2578 337 FunFam Eukaryotic translation initiation factor 6 93 317 - -
Alju01g2578 337 Pfam eIF-6 family 96 295 IPR002769 GO:0042256|GO:0043022
Alju01g2578 337 SUPERFAMILY Pentein 93 316 - -
Alju01g2578 337 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 93 336 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2578 Alju-ChrAlju01 24816132 24822511 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2578 93 337 Eukaryotic Initiation Factors Gene Family AT3G55620 88.571 1.58e-167 464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g2578 01 24816132 24822511 Alju03g2533 03 51790351 51796078 CCT
Alju01g2578 01 24816132 24822511 Alju01g2578 01 24816132 24822511 ECH