Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Alju01g2575 | ATGGATCCAACACTTTGCTCTAACGGCTGTGGATTCTTCGGTTCTCACGAAAACCAGAACATGTGCTCCAAGTGTTACGAGGATCATATTCTCAAGCTCAGTCTAGAGATATGTGAATCAACATTTTATGATCAAGATATGCATACAGCTGATGAGCAGACGAACGATGAGTCTTACAAGGATCATATTATTAAGCTCAGTCTACAAATCTGTGAATCGTCTTCTTCTTCATTTTATGATCAATATTTGCATACAGCTTATGAGCATAAGGACGTGAATTTTTTGTTTTCTGCTTCTAAACTTGATGAATCTAAAAAGAAAAAGAGGTGCAAGAGATGCAAGAAAAAGGTGGGAGTAACAGGATTCAAGTGCCGATGTGGAGACTTGTTTTGTGGGAAGCATAGATACCCAGAAGAACATTCATGCACTGTAGATTATAAGCAGATTGGTCGTCAACTCATTCAAAAACAAAACCCTCTTTGTAAAGCAGATAAACTGTTAGTAAGAGTTTAG | 513 | 0.3762 | MDPTLCSNGCGFFGSHENQNMCSKCYEDHILKLSLEICESTFYDQDMHTADEQTNDESYKDHIIKLSLQICESSSSSFYDQYLHTAYEHKDVNFLFSASKLDESKKKKRCKRCKKKVGVTGFKCRCGDLFCGKHRYPEEHSCTVDYKQIGRQLIQKQNPLCKADKLLVRV | 170 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Alju01g2575 | 170 | Gene3D | - | 88 | 165 | IPR035896 | - | |
| Alju01g2575 | 170 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 2 | 166 | - | - | |
| Alju01g2575 | 170 | Pfam | AN1-like Zinc finger | 110 | 147 | IPR000058 | GO:0008270 | |
| Alju01g2575 | 170 | SMART | AN1_Zf_4 | 110 | 147 | IPR000058 | GO:0008270 | |
| Alju01g2575 | 170 | Pfam | A20-like zinc finger | 5 | 26 | IPR002653 | GO:0003677|GO:0008270 | |
| Alju01g2575 | 170 | FunFam | Zinc finger AN1-type containing 6 | 85 | 165 | - | - | |
| Alju01g2575 | 170 | Gene3D | - | 1 | 56 | - | - | |
| Alju01g2575 | 170 | SMART | A20_3 | 3 | 27 | IPR002653 | GO:0003677|GO:0008270 | |
| Alju01g2575 | 170 | SUPERFAMILY | AN1-like Zinc finger | 102 | 164 | IPR035896 | - | |
| Alju01g2575 | 170 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 49 | - | - | |
| Alju01g2575 | 170 | ProSiteProfiles | Zinc finger A20-type profile. | 1 | 34 | IPR002653 | GO:0003677|GO:0008270 | |
| Alju01g2575 | 170 | ProSiteProfiles | Zinc finger AN1-type profile. | 104 | 150 | IPR000058 | GO:0008270 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Alju01g2575 | Alju-ChrAlju01 | 24777011 | 24777523 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Alju01g2575 | 5 | 166 | C2H2 Transcription Factor Family | AT3G52800 | 35.185 | 2.00e-28 | 102 |