Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2517 ATGGAAGGAACAAATTATCGATTACCACATTTGTGGGGAACGTACCTGAAGAGGAGTAAGAATGTGCCTGCTCCACGTAATAGTGCTTATATGAAACTTAACACGGGTGAAGCAGATGGCATAATATCCTCTAATGCCAAAGGCAACTCCTCTCAAATTTGCAAATACTGGATCAAAGGAAATTGTGCACATGGTGATCGCTGTTGGAACATACATTCCTGGTTTCACGGCGATGGTCTTTCCGTACTCACTAGGCTCCATCAACATAAGAAGATTGTCACTGGGATTACACTTCCAGTTGGATCCGACAAACCTTTTTCCTGTGGCACTGATGGGACACTTCGAATGTGGGATTGTAATACGGGTCAATGTGTTAATGTCATAAATTTGGGTGATGAAGCAAGGTGTTTGATCAGTATGGGTTCATGGGTTTTTGCTGGTATGCGGAGTACTATTAAGGCATGGAACATTCAGAAGGGTGCTGAGATCACTCTTGATGGACCTAAGGGTCATATACTTTCCATGGCTGTTTGCAACGATACACTTTTCGCTGGAGCAATGGATGGTGTTATTTATGTATGGAGACTCAGTTCTGAAGGCAATTTCCCATTTAAACCATTGGGAACATTGACTGGCCACACCAAAGCTGTTGTTTGCTTAACTGGTGGACCTGGGGATAAGCTGTACTCAGGTTCCATGGATCATAGCATTAAGGTGCGAATTATGCGAACTTTGCTGCCATCCTGGCTGGACTATTGTGGGTCTGCATGTTCTGTTTTGTTTGCTGCCAGAGGAAGATTATTCTCAAAACAAGAGATTAGAGTAATAGAAGAAGGCCCCAATGGGCTCTTTTTCACGGGAGACGGCACTGGTTTGCTTACTGTCTGGAAATGGTTAGTAGAGACGGAGTCCAAAACCACATCTTCATGA 930 0.4376 MEGTNYRLPHLWGTYLKRSKNVPAPRNSAYMKLNTGEADGIISSNAKGNSSQICKYWIKGNCAHGDRCWNIHSWFHGDGLSVLTRLHQHKKIVTGITLPVGSDKPFSCGTDGTLRMWDCNTGQCVNVINLGDEARCLISMGSWVFAGMRSTIKAWNIQKGAEITLDGPKGHILSMAVCNDTLFAGAMDGVIYVWRLSSEGNFPFKPLGTLTGHTKAVVCLTGGPGDKLYSGSMDHSIKVRIMRTLLPSWLDYCGSACSVLFAARGRLFSKQEIRVIEEGPNGLFFTGDGTGLLTVWKWLVETESKTTSS 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2517 309 SUPERFAMILY CCCH zinc finger 50 73 IPR036855 GO:0046872
Alju01g2517 309 SUPERFAMILY WD40 repeat-like 78 297 IPR036322 GO:0005515
Alju01g2517 309 SMART WD40_4 79 118 IPR001680 GO:0005515
Alju01g2517 309 SMART WD40_4 158 195 IPR001680 GO:0005515
Alju01g2517 309 SMART WD40_4 203 241 IPR001680 GO:0005515
Alju01g2517 309 Pfam WD domain, G-beta repeat 85 118 IPR001680 GO:0005515
Alju01g2517 309 Pfam WD domain, G-beta repeat 205 239 IPR001680 GO:0005515
Alju01g2517 309 PANTHER - 261 301 IPR044715 -
Alju01g2517 309 ProSiteProfiles Zinc finger C3H1-type profile. 48 75 IPR000571 GO:0046872
Alju01g2517 309 Gene3D - 146 309 IPR015943 GO:0005515
Alju01g2517 309 Gene3D - 62 145 IPR015943 GO:0005515
Alju01g2517 309 ProSiteProfiles Trp-Asp (WD) repeats profile. 86 127 IPR001680 GO:0005515
Alju01g2517 309 SMART c3hfinal6 49 74 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2517 Alju-ChrAlju01 23691568 23695525 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g2517 WD40 0.00078 CL0186