Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2512 ATGAAACTTAACAAGCGTGAAGCAGATGGCATAACATACTCTAATGCCAAAGGCAACTCATCTCAAATTTGCAAATACTGGATCAAAGGAAATTGTGCACATGGCGATCGCTGTTGGAACATACATTCGTGGTTTCACGGAAATGGTCTTTCCGTACTCACTAAGCTCCATCAACATAAGAAGATTGTCACTGGGATTACACTTCCAGTTGGATCCGACAAACTTTTTTCCTGTGGCACTGATGGGACACTTCGAATGTGGGATTGTAATACGGGTCAATGTGTTAATGTGATAAATTTGGGTGATGAAGCAAGGTGTTTGATCAGTATGGGTTCATGGGTTTTTGCTGGTATGCGGAGTGCTATTAAGGCATGGAACATTCAGACGGGTGCTGAGATCACTCTTGATGGACCTAAGGGTCATGTACTTTCCATGGCTGTTTGCAACGATACACTTTTCGCTGGAGCAATGGATGGTGTTATTTATGTATGGAGACTCAGTTCTGAAGGCGATTTCCCATTTAAACCATTGGGAACATTGACTGGCCACACCAAAGCTGTTGTTTGCTTAACTGGTGGACCTGGGGATAAGCTGTACTCAGGTTCCGTGGATCATAGCATTAAGGCCTGGGACCTCAACACATCACAATGCACGACGTTAAAAGGGCACACTGACGTAGTGACATCCCTTATTTTCTGGGACAAGTACTTGTTCTCAAGTTCATTAGACGGCACAGTAAAGATTTGGACTGCCGCTGAAAACGAAACTTTGGAAGTAGTATACACGCACCATGAAGAAAGTGGTGTGGTTAAAATCAATGGGATGATTGACGCACAAGGAAAATCCATATTGTTTTGTTCATGCAAGAACCATTCAGTTGGGCTGTATGAAATGCCAACCTTTGCTGCGAGAGGAAGATTATTCTCAAAACAAGAGATTAGAGTAATAGAAGAAGGCCCCAATGGGCTCTTTTTCACTGGAGACGGCACTGGTTTGTTGACTGTCTGGAAATGGGTAGCAGAGACGGAGCCCAAAACAACATCTTCATGA 1050 0.4352 MKLNKREADGITYSNAKGNSSQICKYWIKGNCAHGDRCWNIHSWFHGNGLSVLTKLHQHKKIVTGITLPVGSDKLFSCGTDGTLRMWDCNTGQCVNVINLGDEARCLISMGSWVFAGMRSAIKAWNIQTGAEITLDGPKGHVLSMAVCNDTLFAGAMDGVIYVWRLSSEGDFPFKPLGTLTGHTKAVVCLTGGPGDKLYSGSVDHSIKAWDLNTSQCTTLKGHTDVVTSLIFWDKYLFSSSLDGTVKIWTAAENETLEVVYTHHEESGVVKINGMIDAQGKSILFCSCKNHSVGLYEMPTFAARGRLFSKQEIRVIEEGPNGLFFTGDGTGLLTVWKWVAETEPKTTSS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2512 349 SUPERFAMILY CCCH zinc finger 20 43 IPR036855 GO:0046872
Alju01g2512 349 PRINTS G protein beta WD-40 repeat signature 198 212 IPR020472 -
Alju01g2512 349 PRINTS G protein beta WD-40 repeat signature 75 89 IPR020472 -
Alju01g2512 349 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Alju01g2512 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 220 IPR001680 GO:0005515
Alju01g2512 349 PANTHER - 13 342 IPR044715 -
Alju01g2512 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Alju01g2512 349 ProSitePatterns Trp-Asp (WD) repeats signature. 198 212 IPR019775 -
Alju01g2512 349 Pfam WD domain, G-beta repeat 218 249 IPR001680 GO:0005515
Alju01g2512 349 Pfam WD domain, G-beta repeat 175 211 IPR001680 GO:0005515
Alju01g2512 349 Pfam WD domain, G-beta repeat 53 88 IPR001680 GO:0005515
Alju01g2512 349 ProSiteProfiles Trp-Asp (WD) repeats profile. 220 259 IPR001680 GO:0005515
Alju01g2512 349 SMART c3hfinal6 19 44 IPR000571 GO:0046872
Alju01g2512 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 88 - -
Alju01g2512 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 216 - -
Alju01g2512 349 Gene3D - 31 106 IPR015943 GO:0005515
Alju01g2512 349 SMART WD40_4 254 297 IPR001680 GO:0005515
Alju01g2512 349 SMART WD40_4 49 88 IPR001680 GO:0005515
Alju01g2512 349 SMART WD40_4 213 250 IPR001680 GO:0005515
Alju01g2512 349 SMART WD40_4 128 165 IPR001680 GO:0005515
Alju01g2512 349 SMART WD40_4 173 211 IPR001680 GO:0005515
Alju01g2512 349 SMART WD40_4 300 337 IPR001680 GO:0005515
Alju01g2512 349 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 220 249 - -
Alju01g2512 349 SUPERFAMILY WD40 repeat-like 38 337 IPR036322 GO:0005515
Alju01g2512 349 ProSiteProfiles Zinc finger C3H1-type profile. 18 45 IPR000571 GO:0046872
Alju01g2512 349 Gene3D - 107 348 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2512 Alju-ChrAlju01 23647838 23649939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2512 111 260 Acyl Lipid Metabolism Gene Families AT3G18860 30.263 9.42e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g2512 WD40 0.0001 CL0186