Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2511 ATGCAGGCAACGGCGACCACCTTAGAGTCGAATCTGTTGAGCAATCTCTCCTTCAAGAGCTTTAAACTCAAGACCAAGAAACAGGAGCTACTGATTCGGGGTGTTGGAAATGCTTCTTGCGATGCAGATTCAGTTTGTGGGATTTCAGCACGTGCAGTCTTGAGAACACATGGCTGCCATGGGCGTGTTTTTCTTGTTGCAGATACGATCGTGCTAGAGGAGTTGAAATTGGAAACAAAGACATTAAACTTGAGTACTTGGAAGAGGCATTCACCACACAGAATTGGATTGTTCGTGTTTGTAAGAATGAATACAAGAGTTTCAAGGAGAAGTGAGGTTCCTTCTTATAGGGACACTCGCAACTATTGGGCTGCAGGGCAACACAACAATAAGCCCTGCAGGTTTGTGCGCAATGAAACTTCATTGCAGTCCGCTCCACGTAATGGTGCTTATATGAAACTTAACAAGCGTGAAGCAGATGGCATAACATACTCTAATGCCAAAGGCAACTCATCTCAAATTTGCAAATACTGGATCAAAGGAAATTGTGCACATGGCGATCGCTGTTGGAACATACATTCGTGGTTTCACGGAAATGGTCTTTCCGTACTCACTAAGCTCCATCAACATAAGAAGATTGTCACTGGGATTACACTTCCAGTTGGATCCGACAAACTTTTTTCCTGTGGCACTGATGGGACACTTCGAATGTGGGATTGTAATACGGGTCAATGTGTTAATGTGATAAATTTGGGTGATGAAGCAAGGTGTTTGATCAGTATGGGTTCATGGGTTTTTGCTGGTATGCGGAGTGCTATTAAGGCATGGAACATTCAGACGGGTGCTGAGATCACTCTTGATGGACCTAAGGGTCATGTACTTTCCATGGCTGTTTGCAACGATACACTTTTCGCTGGAGCAATGGATGGTGTTATTTATGTATGGAGACTCAGTTCTGAAGGCGATTTCCCATTTAAACCATTGGGAACATTGACTGGCCACACCAAAGCTGTTGTTTGCTTAACTGGTGGACCTGGGGATAAGCTGTACTCAGGTTCCGTGGATCATAGCATTAAGGCTTGGGACCTTAACACATTACAATGCACGACGTTAAAAGGGCACACTGACGTAGTGACATGCCTTATTTTCTGGGGCAAATACTTATTCTCAAGTTCATTGGACGGCACAGTAAAGATTTGGACTGCAGCTGAAAGCGAAACTTTGGAAGTAGTGTACACGCACCATGAAGAAAGTGGTGTGGTTAAAATCAATGGGATGATTGACGCACAAGGAAAATCCATATTGTTTTGTTCATGCAAGAACCATTCAGTTGGGCTGTATGAAATGCCAACGTTTGCTGCTAGAGGAAGATTATTCTCAAAACTAGAGATTAGAGTAATAGAAGAAGGCCCCAATGGGCTCTTTTTCACGGGAGACGGCACTGGTTTGCTTACTGTCTGGAAATGGCTAGTAGAAACGGAGCCCAAAACCACATCTTCATGA 1503 0.4385 MQATATTLESNLLSNLSFKSFKLKTKKQELLIRGVGNASCDADSVCGISARAVLRTHGCHGRVFLVADTIVLEELKLETKTLNLSTWKRHSPHRIGLFVFVRMNTRVSRRSEVPSYRDTRNYWAAGQHNNKPCRFVRNETSLQSAPRNGAYMKLNKREADGITYSNAKGNSSQICKYWIKGNCAHGDRCWNIHSWFHGNGLSVLTKLHQHKKIVTGITLPVGSDKLFSCGTDGTLRMWDCNTGQCVNVINLGDEARCLISMGSWVFAGMRSAIKAWNIQTGAEITLDGPKGHVLSMAVCNDTLFAGAMDGVIYVWRLSSEGDFPFKPLGTLTGHTKAVVCLTGGPGDKLYSGSVDHSIKAWDLNTLQCTTLKGHTDVVTCLIFWGKYLFSSSLDGTVKIWTAAESETLEVVYTHHEESGVVKINGMIDAQGKSILFCSCKNHSVGLYEMPTFAARGRLFSKLEIRVIEEGPNGLFFTGDGTGLLTVWKWLVETEPKTTSS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2511 500 SUPERFAMILY CCCH zinc finger 171 194 IPR036855 GO:0046872
Alju01g2511 500 PANTHER - 120 490 IPR044715 -
Alju01g2511 500 Gene3D - 257 499 IPR015943 GO:0005515
Alju01g2511 500 ProSiteProfiles Zinc finger C3H1-type profile. 169 196 IPR000571 GO:0046872
Alju01g2511 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 207 248 IPR001680 GO:0005515
Alju01g2511 500 SMART WD40_4 324 362 IPR001680 GO:0005515
Alju01g2511 500 SMART WD40_4 364 401 IPR001680 GO:0005515
Alju01g2511 500 SMART WD40_4 279 316 IPR001680 GO:0005515
Alju01g2511 500 SMART WD40_4 200 239 IPR001680 GO:0005515
Alju01g2511 500 SMART WD40_4 405 448 IPR001680 GO:0005515
Alju01g2511 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 207 239 - -
Alju01g2511 500 PRINTS G protein beta WD-40 repeat signature 226 240 IPR020472 -
Alju01g2511 500 PRINTS G protein beta WD-40 repeat signature 349 363 IPR020472 -
Alju01g2511 500 PRINTS G protein beta WD-40 repeat signature 388 402 IPR020472 -
Alju01g2511 500 Pfam WD domain, G-beta repeat 204 239 IPR001680 GO:0005515
Alju01g2511 500 Pfam WD domain, G-beta repeat 326 362 IPR001680 GO:0005515
Alju01g2511 500 Pfam WD domain, G-beta repeat 369 400 IPR001680 GO:0005515
Alju01g2511 500 SMART c3hfinal6 170 195 IPR000571 GO:0046872
Alju01g2511 500 SUPERFAMILY WD40 repeat-like 202 489 IPR036322 GO:0005515
Alju01g2511 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 371 410 IPR001680 GO:0005515
Alju01g2511 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 371 400 - -
Alju01g2511 500 ProSitePatterns Trp-Asp (WD) repeats signature. 349 363 IPR019775 -
Alju01g2511 500 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 331 365 - -
Alju01g2511 500 Gene3D - 182 256 IPR015943 GO:0005515
Alju01g2511 500 ProSiteProfiles Trp-Asp (WD) repeats profile. 331 371 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2511 Alju-ChrAlju01 23630681 23639609 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2511 178 476 Acyl Lipid Metabolism Gene Families AT3G18860 25.000 4.80e-06 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g2511 WD40 0.00017 CL0186