Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2509 ATGTTGAACTGTCTCATGTATAAGCTCTGTTACTATCGGTTTGGGGAGCTGACAACAGAATATGGAAAACCACCTGGATACGACCGTGCTAGAGGAGTTGAAATTGGAAACAAAGACATTAAACTTGAATTCTTGGAAGAGGCATTCACCACACAGAATTGGATTGTTCGTATTTATAAGGAGGCGACAATGACAGTACAAGTGGTCTCTACCTTTGATTTAGGAATGAATACAAGAGTTTCAAGGAGAAGTGAGGTTCCTTCTTATAGGGACACTCGCAACTATTGGGCTGCAGGGCAACACAACAATAAGCCCTGCAGGTTTGTGCGCAATGAAACTTCACTGCAGTCCGCTCCATGTAATAGTGCTTATACGAAACTTAACAAGCGTGAAGCAGATGGCATAATATCCTCTAATGCAAAAGGCAACTCATCTCAAATTTGCAAATACTGGATCAAAGGAAATTGTGCACATGGCGATCGCTGTTGGAACATACATTCCTGGTTTCATGGCAATGGTCTTTCCGTACTCACTAAGCTCCATCAACATAAGAAGATTGTCACTGGGATTACACTTCCAGTTGGATCCGACAAACTTTTTTCCTGTGGCATCGATGGGACACTTCGAATGTGGGATTGTAATACGGGTCAATGTGTTAATGTGATAAATTTGGGTGATGAAGCAAGGTGTTTGATCAGTATGGGTTCATGGGTTTTTGCTGGTATGCGGAGTGCTATTAAGGCATGGAACATTCAGACGGGCGCTGAGATCACTCTTGATGGACCTAAGGGTCATGTACTTTCCATGGCTGTTTGCAACGATACTCTTTTCGCTGGAGCAATGGATGGTGTTATTTATGTATGGAGACTCAGTTCTGAAGGCAATTTCCCATTTAAACCATTGGGAACATTGACTGGCCACACCAAAGCTGTTGTTTGCTTAACTGGTGGACCTGGGGATAAGCTGTACTCAGGTTCCGTGGATCATAGCATTAAGGCCTGGGACCTCAACACATTACAATGCACGACGTTAAAAGGGCACACTGACGTAGTGACATCCCTTATTTTCTGGGACAAGTACTTGTTCTCAAGTTCATTAGACGGCACAGTAAAGATTTGGATTGCCGCTGAAAACGAAACATTGGAAGCAGTATACACGCACCATGAAGAAAGTGGTGTGGTTAAAATCAATGGGATGATTGACGCACAAGGAAAATCCATATTGTTTTGTTCATGCAAGAACCATTCAGTTGGGCTGTATGAAATGCCAACGTTTGCTGCGAGAGGAAGATTATTCTCAAAACAAGAGATTAGAGTAATAGAAGAAGGCCCCAATGGGCTCTTTTTCACTGGAGACGGCACTGGTTTGCTGACTGTCTGGAAATGGCTAGCAGAGACGGAGCCCAAAACCACATCTTCATGA 1422 0.4332 MLNCLMYKLCYYRFGELTTEYGKPPGYDRARGVEIGNKDIKLEFLEEAFTTQNWIVRIYKEATMTVQVVSTFDLGMNTRVSRRSEVPSYRDTRNYWAAGQHNNKPCRFVRNETSLQSAPCNSAYTKLNKREADGIISSNAKGNSSQICKYWIKGNCAHGDRCWNIHSWFHGNGLSVLTKLHQHKKIVTGITLPVGSDKLFSCGIDGTLRMWDCNTGQCVNVINLGDEARCLISMGSWVFAGMRSAIKAWNIQTGAEITLDGPKGHVLSMAVCNDTLFAGAMDGVIYVWRLSSEGNFPFKPLGTLTGHTKAVVCLTGGPGDKLYSGSVDHSIKAWDLNTLQCTTLKGHTDVVTSLIFWDKYLFSSSLDGTVKIWIAAENETLEAVYTHHEESGVVKINGMIDAQGKSILFCSCKNHSVGLYEMPTFAARGRLFSKQEIRVIEEGPNGLFFTGDGTGLLTVWKWLAETEPKTTSS 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2509 473 PANTHER - 112 465 IPR044715 -
Alju01g2509 473 Pfam WD domain, G-beta repeat 299 335 IPR001680 GO:0005515
Alju01g2509 473 Pfam WD domain, G-beta repeat 177 212 IPR001680 GO:0005515
Alju01g2509 473 Pfam WD domain, G-beta repeat 342 373 IPR001680 GO:0005515
Alju01g2509 473 SUPERFAMILY WD40 repeat-like 175 465 IPR036322 GO:0005515
Alju01g2509 473 PRINTS G protein beta WD-40 repeat signature 199 213 IPR020472 -
Alju01g2509 473 PRINTS G protein beta WD-40 repeat signature 361 375 IPR020472 -
Alju01g2509 473 PRINTS G protein beta WD-40 repeat signature 322 336 IPR020472 -
Alju01g2509 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 344 383 IPR001680 GO:0005515
Alju01g2509 473 SMART c3hfinal6 143 168 IPR000571 GO:0046872
Alju01g2509 473 ProSitePatterns Trp-Asp (WD) repeats signature. 322 336 IPR019775 -
Alju01g2509 473 SMART WD40_4 424 461 IPR001680 GO:0005515
Alju01g2509 473 SMART WD40_4 337 374 IPR001680 GO:0005515
Alju01g2509 473 SMART WD40_4 252 289 IPR001680 GO:0005515
Alju01g2509 473 SMART WD40_4 378 421 IPR001680 GO:0005515
Alju01g2509 473 SMART WD40_4 297 335 IPR001680 GO:0005515
Alju01g2509 473 SMART WD40_4 173 212 IPR001680 GO:0005515
Alju01g2509 473 ProSiteProfiles Zinc finger C3H1-type profile. 142 169 IPR000571 GO:0046872
Alju01g2509 473 Gene3D - 155 233 IPR015943 GO:0005515
Alju01g2509 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 344 373 - -
Alju01g2509 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 221 IPR001680 GO:0005515
Alju01g2509 473 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 304 338 - -
Alju01g2509 473 Gene3D - 234 472 IPR015943 GO:0005515
Alju01g2509 473 ProSiteProfiles Trp-Asp (WD) repeats profile. 304 344 IPR001680 GO:0005515
Alju01g2509 473 SUPERFAMILY CCCH zinc finger 144 167 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2509 Alju-ChrAlju01 23585320 23593413 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2509 1 60 Miscellaneous Gene Families AT1G34130 93.333 1.17e-31 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g2509 WD40 0.00016 CL0186