Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2506 ATGAAACTTAATAAGTGTGAAGCAGATGGCATAATATACTCTAATGCCAAAGGCAACTCATCTCAAATTTGCAAATACTGGATCAAAGGAAATTGTGCACATGGTGATCGCTGTTGGAACTTACATTCCTGGTTTCACGGTGATGGTATTTCCATACTCACTAAGCTCCATCAACATAAGAAGATTGTCACTGGGATTACACTTCCAGTTGGATCCGACAAACTTTTTTCCTGTGGCACTGATGGGACACTTCGAATGTGGGATTGTAATACGGGTCAATGTGTTAATGTGATAAATTTGGGTGATGAAGCAAGGTGTTTGATCAGTATGGGTTCATGGGTTTTTGCTGGTATGCGGAGTGCTATTAAGGCATGGAACATTCAGACGGGTGCTGAGATCACTCTTGATGGACCTAAGGGTCATGTACTTTCCATGGCTGTTTGCAACGATACACTTTTCGCTGGAGCAATGGATGGTGTTATTTATGTATGGAGACTCAGTTCTGAAGGCAATTTCCCATTTAAATCATTGGGAACATTGACTGGCCACACCAAAGCTGTTGTTTGCTTAACTGGTGGTGGGGATAAGCTGTACTCAGGTTCCGTGGATCATAGCATTAAGGCTTGGGACCTTAACACATTACAATGCACGACGTTAAAAGGGCACACTGACGTAGTGACATCCCTTATTTTCTGGGACAAATACTTATTCTCAAGTTCATTGGACGGCACAGTAAAGATTTGGACTGCCGCTGAAAACGAAACTTTGGAAGTAGTATACACGCACCATGAAGAAAGTGGTGTGGTTAAAATCAATGGGATGATTGACGCACAAGGAAAATCCATATTGTTTTGTTCATGCAAGAACCATTCAGTTGGGCTGTATGAAATGCCAACGTTTGCTGCGAGAGGAAGATTATTCTCAAAACAAGAGATTAGAGTAATAGAAGAAGGCCCCAATGGGCTCTTTTTCACGGGAGACGGAACTGGTTTGCTGACTGTCTGGAAATGGCTAGCAGAGACAGAGCCCAAAACCACATCTTCATGA 1047 0.425 MKLNKCEADGIIYSNAKGNSSQICKYWIKGNCAHGDRCWNLHSWFHGDGISILTKLHQHKKIVTGITLPVGSDKLFSCGTDGTLRMWDCNTGQCVNVINLGDEARCLISMGSWVFAGMRSAIKAWNIQTGAEITLDGPKGHVLSMAVCNDTLFAGAMDGVIYVWRLSSEGNFPFKSLGTLTGHTKAVVCLTGGGDKLYSGSVDHSIKAWDLNTLQCTTLKGHTDVVTSLIFWDKYLFSSSLDGTVKIWTAAENETLEVVYTHHEESGVVKINGMIDAQGKSILFCSCKNHSVGLYEMPTFAARGRLFSKQEIRVIEEGPNGLFFTGDGTGLLTVWKWLAETEPKTTSS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2506 348 Pfam WD domain, G-beta repeat 217 248 IPR001680 GO:0005515
Alju01g2506 348 Pfam WD domain, G-beta repeat 175 210 IPR001680 GO:0005515
Alju01g2506 348 Pfam WD domain, G-beta repeat 53 88 IPR001680 GO:0005515
Alju01g2506 348 ProSitePatterns Trp-Asp (WD) repeats signature. 197 211 IPR019775 -
Alju01g2506 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 258 IPR001680 GO:0005515
Alju01g2506 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 56 97 IPR001680 GO:0005515
Alju01g2506 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 56 88 - -
Alju01g2506 348 Gene3D - 107 347 IPR015943 GO:0005515
Alju01g2506 348 SUPERFAMILY CCCH zinc finger 20 43 IPR036855 GO:0046872
Alju01g2506 348 Gene3D - 30 106 IPR015943 GO:0005515
Alju01g2506 348 PRINTS G protein beta WD-40 repeat signature 236 250 IPR020472 -
Alju01g2506 348 PRINTS G protein beta WD-40 repeat signature 75 89 IPR020472 -
Alju01g2506 348 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Alju01g2506 348 SMART c3hfinal6 19 44 IPR000571 GO:0046872
Alju01g2506 348 SUPERFAMILY WD40 repeat-like 38 336 IPR036322 GO:0005515
Alju01g2506 348 ProSiteProfiles Trp-Asp (WD) repeats profile. 180 219 IPR001680 GO:0005515
Alju01g2506 348 ProSiteProfiles Zinc finger C3H1-type profile. 18 45 IPR000571 GO:0046872
Alju01g2506 348 PANTHER - 13 341 IPR044715 -
Alju01g2506 348 SMART WD40_4 212 249 IPR001680 GO:0005515
Alju01g2506 348 SMART WD40_4 253 296 IPR001680 GO:0005515
Alju01g2506 348 SMART WD40_4 128 165 IPR001680 GO:0005515
Alju01g2506 348 SMART WD40_4 173 210 IPR001680 GO:0005515
Alju01g2506 348 SMART WD40_4 49 88 IPR001680 GO:0005515
Alju01g2506 348 SMART WD40_4 299 336 IPR001680 GO:0005515
Alju01g2506 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 180 213 - -
Alju01g2506 348 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2506 Alju-ChrAlju01 23568940 23570989 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2506 111 259 Acyl Lipid Metabolism Gene Families AT3G18860 31.788 3.82e-10 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Alju01g2506 WD40 0.00026 CL0186