Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2479 ATGGCCAGGGTCGGGTTGCCACCAGGTTTTCGGTTCCATCCGACCGACGAAGAGCTTGTCAATTATTATCTCAAGAGGAAGATCAATGGCCAAGAAATTGAACTTGACATCATCCCTGAGATTGATCTCTACAAATGTGAGCCTTGGGAACTTGCAGACAAGTCATTTCTGCCAAGTAGAGATCCAGAGTGGTACTTCTTTGGACCAAGAGACAGGAAATACCCAAATGGTTTCAGAACAAACAGAGCCACTAGAGCTGGGTACTGGAAGTCCACAGGCAAGGACAGAAGGGTAACTTCCCAAAACAGACCCATTGGCATGAAGAAAACTCTTGTTTACTACAGAGGTAGAGCCCCTCAAGGCATCAGAACTGACTGGGTCATGCACGAGTATCGCCTCGACGACAAAGATTCCGAGGACACCTCCGGAATACAGGATACTTATGCATTGTGCCGTGTGTTCAAGAAAAATGGGATCTGCTCTGAAATTGAAGAGCAAGGGCAGAGTAGTTTAACACTAATTGAGAGCTCACAAACCGTAAACATTAACAACGAAAGCGAAACCATGTCTCCGGATCCAGCCGGGGCATCTTCGTGCTTGGAGGAGGAAGACAAAGATGATTCATGGATGCAGTTCATTACAGATGATGCATGGTATCCTTCTAATGCAGCCATGGCAGGTTGTGAAGAAGTTTCTCATTTTACATTCACAAATTGA 717 0.4575 MARVGLPPGFRFHPTDEELVNYYLKRKINGQEIELDIIPEIDLYKCEPWELADKSFLPSRDPEWYFFGPRDRKYPNGFRTNRATRAGYWKSTGKDRRVTSQNRPIGMKKTLVYYRGRAPQGIRTDWVMHEYRLDDKDSEDTSGIQDTYALCRVFKKNGICSEIEEQGQSSLTLIESSQTVNINNESETMSPDPAGASSCLEEEDKDDSWMQFITDDAWYPSNAAMAGCEEVSHFTFTN 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2479 238 ProSiteProfiles NAC domain profile. 6 156 IPR003441 GO:0003677|GO:0006355
Alju01g2479 238 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 5 186 - -
Alju01g2479 238 Gene3D NAC domain 15 159 IPR036093 GO:0003677|GO:0006355
Alju01g2479 238 FunFam Nac domain-containing protein 86 15 159 - -
Alju01g2479 238 SUPERFAMILY NAC domain 3 157 IPR036093 GO:0003677|GO:0006355
Alju01g2479 238 Pfam No apical meristem (NAM) protein 7 133 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2479 Alju-ChrAlju01 23225589 23229718 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2479 1 227 NAC Transcription Factor Family AT3G17730 77.500 3.47e-131 368
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju01g2479 NAM 9.4e-40 No_clan