Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2477 ATGTATAGAATAATATCCACGCCGGCCAGCAAATTTCGCCAATTCGGGCGACTCCAATCCAAGCCCTTCTCCGGCACCACTACCACCGACGAGGAACGCGCCCATCTCATCCTATGGCGCCACCAGATCCTCGATCCCGACAGCGACATCGTCGCCCGTTGGAACAGGATCTTCCTCGTTACCAGTCTCATCGCGCTTTTCATCGACCCTCTTTACTTGTATCTCCCCAGCATCGGAGGCCCCGGCTGCTTGCAAGCCAATATGGAATTGAGCATCACCGTCACTCTTCTCCGCTCCTTCTCTGACCTCTTCTATGTCCTCCACATGATCATGAAATTTCGCACCGCCTTCGTTGCCCCAAATTCTAGGATTTTCGGCCGTGGTGAGCTCGTTACCGATGCCCGTGAAATTGCCAAACGCTACTTGAAGTCTGATTTTGCTATCGATCTCGCCGCAACCCTTCCACTGCCCCAGATTGTGATTTGGTTAGTGATTCCAACGTCCGCGGTTGACCATGCCCATATCACTCTTGCTCTTTTCGTGCTTATTCAGTATATTCCTAGACTGTTTCTTATCTTCCCGTTGAACAAGCGTATTGTTAAAACCTCTGGTGTTGTTGCCAAGACTCCTTGGACTGGAGCTGCCTATAATCTTCTTCTTTACATGCTAGCTAGTCATGTTATAGGAGCAACTTGGTATTTATCTGCAATAGCACGACAATTAAACTGTTGGACTGAAGAGTGCAGAGCTGAGAACGAGTTACAAACCCTGACCTGCCGTATAGGTTATCTTGGTTGTGGGACTTTGAACGACCCTGATAGGCAATACTGGCTAAACGTCACCAATGTTGTTAAGAGTTGCGATGTAAAGAGCGAAAATAACAAATATTTGTTTGGCATGTTTCAAGATGCTTTCAGGAAGGCAGTTGCTACTGGCAGTTTCAGTGAGAGATTCTTCTATTGTCTTTGGTGGGGTATAAGAAATTTGAGCTCATACGGACAGACCTTGGACACCACTGTATTTGTTGGGGAAACACTTTTTTCCATCGTCCTATGCGTTGTAGGATTAGTTCTCTTTGCACTTTTGATTGGAAACATGCAGACATATTTAGAGTCAATGTCAGCAAGACTTGAAGAATGGAGGATTAGGAAGAGAGATACTGAGGAATGGATGAGGCATCGCCAGTTACCTCCAGAGTTGCAGGAACGTGTCCGTCGCTTTGTTCAATACCAGTGGCTTGCAACAAGAGGAGTTGATGAGAAATTCATACTTCGTTCATTACCTTTGGATCTTCGTCGTGAGATTCAACGCCACTTGTGTCTCTCCCTTGTTCGCCGTGTGCCCTTCTTTTCACAGATGGATGATCAACTTCTTGATGCCATTTGTGAACACCTTGTGTTGTCCCTAAGCACTGCAGGCACCTACATTTTTCGGGAGGGTGATCCAGTGAATGAAATGGTGTTCATCATAAGAGGGCAATTAGAGAGCTCGACGACGAATGGTGGAAGGTCCGGGTTCTTTAACTCCATTACCCTCAGACCCGGAGACTTTTGCGGTGAGGAACTATTGACATGGGCCTTAATGCCAAACTCAAGCTCAAACCTGCCTTCTTCAACTCGAACCGTTAGGGCTCTCACTGAAGTGGAAGCTTTTGCATTACTAGGAGATGATCTCAAAGCCGTGGCGGCTCAGTTCAAGCGGCTTCACAGTAAGAAACTTCAGCATGCTTTTAGGTATTATTCTCATCAATGGAGGGCATGGGCAGCTTGCATAATAGAGGCAGCTTGGAGAAAGTATAAGAAACGCAAGGCATCTAGGGAGTTGTCTCTGAGAGAGAGCCTCTACTATATTGCAAGACCAGAGGCAGAAGCTAGTTACAGTGATGACCTGCTTGATGATTATATGGAGGAGGAGGCCTCATCAAATAGCAATAATAATGATAATCAAGCTCTGGGTGCAACTGTTACGGCCTCCAAGTTTGCTGCAAATGCAAGGAAAGGGACTACTAGTACCGTCCATAAGGCTCCATTGTTCAAGCCAGATGAACCTGATTTCTCTTTGCTATAG 2067 0.4654 MYRIISTPASKFRQFGRLQSKPFSGTTTTDEERAHLILWRHQILDPDSDIVARWNRIFLVTSLIALFIDPLYLYLPSIGGPGCLQANMELSITVTLLRSFSDLFYVLHMIMKFRTAFVAPNSRIFGRGELVTDAREIAKRYLKSDFAIDLAATLPLPQIVIWLVIPTSAVDHAHITLALFVLIQYIPRLFLIFPLNKRIVKTSGVVAKTPWTGAAYNLLLYMLASHVIGATWYLSAIARQLNCWTEECRAENELQTLTCRIGYLGCGTLNDPDRQYWLNVTNVVKSCDVKSENNKYLFGMFQDAFRKAVATGSFSERFFYCLWWGIRNLSSYGQTLDTTVFVGETLFSIVLCVVGLVLFALLIGNMQTYLESMSARLEEWRIRKRDTEEWMRHRQLPPELQERVRRFVQYQWLATRGVDEKFILRSLPLDLRREIQRHLCLSLVRRVPFFSQMDDQLLDAICEHLVLSLSTAGTYIFREGDPVNEMVFIIRGQLESSTTNGGRSGFFNSITLRPGDFCGEELLTWALMPNSSSNLPSSTRTVRALTEVEAFALLGDDLKAVAAQFKRLHSKKLQHAFRYYSHQWRAWAACIIEAAWRKYKKRKASRELSLRESLYYIARPEAEASYSDDLLDDYMEEEASSNSNNNDNQALGATVTASKFAANARKGTTSTVHKAPLFKPDEPDFSLL 688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2477 688 FunFam Cyclic nucleotide-gated ion channel 1 447 565 - -
Alju01g2477 688 ProSiteProfiles cAMP/cGMP binding motif profile. 449 579 IPR000595 -
Alju01g2477 688 Gene3D Jelly Rolls 447 567 IPR014710 -
Alju01g2477 688 SMART cnmp_10 449 580 IPR000595 -
Alju01g2477 688 Pfam Cyclic nucleotide-binding domain 472 564 IPR000595 -
Alju01g2477 688 MobiDBLite consensus disorder prediction 664 688 - -
Alju01g2477 688 CDD CAP_ED 449 580 IPR000595 -
Alju01g2477 688 Gene3D Helix hairpin bin 373 440 - -
Alju01g2477 688 SUPERFAMILY Voltage-gated potassium channels 45 371 - -
Alju01g2477 688 SUPERFAMILY cAMP-binding domain-like 378 574 IPR018490 -
Alju01g2477 688 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 29 685 - -
Alju01g2477 688 Gene3D - 58 372 - -
Alju01g2477 688 Pfam Ion transport protein 54 376 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2477 Alju-ChrAlju01 23201099 23203986 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2477 37 687 Ion Channels AT5G14870 66.220 0.0 942