Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2476 ATGGCAACCACTTTTGCGGCCACTACTCCTGCAACTTCGTTACCCGTTTCTTTCCGCAACAATATTCTGAGAATCAGAATTAGTGTGGCTAACATTCGAAGCAACAGAAATTTCCCTTCCTCATCGCTCAGAAATGGCTCCTCCTTCGCGTTGGCGTCTTTACCTTCTTCTGCTTCTCAATCACCAACCCCATCTTCCAATACTAGACCCATTTCTTCTCCTTCAACTAAGCTCTATGTCAGTGGGCTATCTTTTCGTACCACCGAAGAGAGCTTGCGAAATGCCTTCAAGAAATTTGGTGAACTTGTGGAAGTCAACCTGGTGATGGATAAAATAGCAAATAGACCAAGAGGATTTGCCTTTCTTCGTTATGCAACTGAAGAGGATTCTCAGAAGGCTATTGATGGAATGCATGGGAAGTTCTTGGATGGTAGGGTCATATTTGTGGAAGTTGCAAAACCAAGATCAGAGTTGCGCCAAAGGCTTAACCAAAACCCTAGAGGGGAATGA 510 0.4431 MATTFAATTPATSLPVSFRNNILRIRISVANIRSNRNFPSSSLRNGSSFALASLPSSASQSPTPSSNTRPISSPSTKLYVSGLSFRTTEESLRNAFKKFGELVEVNLVMDKIANRPRGFAFLRYATEEDSQKAIDGMHGKFLDGRVIFVEVAKPRSELRQRLNQNPRGE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2476 169 PANTHER NUCLEOLAR PROTEIN 8 58 160 - -
Alju01g2476 169 SMART rrm1_1 77 150 IPR000504 GO:0003723
Alju01g2476 169 SUPERFAMILY RNA-binding domain, RBD 61 167 IPR035979 GO:0003676
Alju01g2476 169 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 76 154 IPR000504 GO:0003723
Alju01g2476 169 SMART rrm2_1 77 150 IPR003954 GO:0003676
Alju01g2476 169 Gene3D - 55 169 IPR012677 -
Alju01g2476 169 MobiDBLite consensus disorder prediction 54 74 - -
Alju01g2476 169 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 78 147 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2476 Alju-ChrAlju01 23195902 23198361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2476 76 165 Eukaryotic Initiation Factors Gene Family AT4G34110 30.851 1.57e-10 57.0