Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2475 ATGCAGAATCAAATAGAGAGCACAATGTCCAACAACTCCAGCATTGCCAGTAACCGCCATTCAGATGGCAGCACAAAATCTGAAAATGTTGTCTGCAGGAAGGATATAACTACTACAGGAGACAATTTTACTCCCAAGGCAAGGAAACCATATACCATTACTAAGCAAAGGGAAAAATGGACAGAGGAGGAGCATCTGAAGTTCCTTGAAGCTTTGAAATTGTATGGCCGTGGTTGGCATCAAATTGAAGAACATGTAGGTACCAAAACTGCAGTTCAGATTCGAAGCCATGCACAGAAGTTCTTCTCTAAGGTTGCGCGGGAATCTGAGGGTAGCACTGAAAGTTCTATAAAGCCAATTGACATACCACCTCCTCGGCCAAAAAGGAAACCGTTGCATCCATATCCTCGCAAATTAGCTGACTCATTCAAAGGTCACTCAAATGAATCAGAAAGATCTCTATCTCCAAATCTGTCAGCTATGGCAAAAGACACCCAATCTCCAACTTCAGTGTTATCTGCATTTGGTTCAGAAGCATTGGGATCAGCATTTTCTGAGCAAACTAATAGATGTCCTTCCCTATATTCTTGCACTACTGATATCCACTCGGTCAGTTTACCACCAGTTGGAAAAGAAAATGATTGTATTACATCCAATTCATCCCAGGAGGAAGAGAAAGGATATTTAGCTTCAGGACCATCAATTTCTGATTTGAAGACAGATCTGTCCCTGAAGGTTGAGGTGACTACTGTAAAAAATGAGAATTCTACTGAAGATGCTGCCAACACGCCCGATGTGACAAGCATTAAGCTTTTTGGAAGGACTGTCTCCTTGACAATTAATCAGAAGTCAGTTAATATAGAAGAGAAAATTAAGTCAGTTGTATGTAAGGAGAACTCTAGCTCTGTTGAGTCAGGATTCAACGGTTCTTTACCATGCTGGAATTTACGCCCAGGTCTTCGAGATTTAGATTTTGGGCTGCGCAACGAAATTTTAAATTTTGCACCCCTTCATCCCTCCCTCAAAGAGAGAACAATTGAGAAGGTAAGTCATTGTATTGATTCTAACGCTGAATCAGTTAATGAAATGGAAAATGGAGACAAGTTGGATGCTAGTGATTCTCAATGTCAATCATCTCATCATAAGGGAGGAATCTCCCCCAAATCTCCACGAGGGTTTGTACCATATAAAAGGTGTTTAGCTGAGAGAGGTGTAAATGAATTTGTTGATGGATTGGAAGAGAGGAAAGGGCAACGAACTAGAGTGTGCTCGTAG 1275 0.4118 MQNQIESTMSNNSSIASNRHSDGSTKSENVVCRKDITTTGDNFTPKARKPYTITKQREKWTEEEHLKFLEALKLYGRGWHQIEEHVGTKTAVQIRSHAQKFFSKVARESEGSTESSIKPIDIPPPRPKRKPLHPYPRKLADSFKGHSNESERSLSPNLSAMAKDTQSPTSVLSAFGSEALGSAFSEQTNRCPSLYSCTTDIHSVSLPPVGKENDCITSNSSQEEEKGYLASGPSISDLKTDLSLKVEVTTVKNENSTEDAANTPDVTSIKLFGRTVSLTINQKSVNIEEKIKSVVCKENSSSVESGFNGSLPCWNLRPGLRDLDFGLRNEILNFAPLHPSLKERTIEKVSHCIDSNAESVNEMENGDKLDASDSQCQSSHHKGGISPKSPRGFVPYKRCLAERGVNEFVDGLEERKGQRTRVCS 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2475 424 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 104 IPR006447 GO:0003677
Alju01g2475 424 PANTHER SWI/SNF COMPLEX-RELATED 10 293 - -
Alju01g2475 424 MobiDBLite consensus disorder prediction 123 148 - -
Alju01g2475 424 MobiDBLite consensus disorder prediction 105 165 - -
Alju01g2475 424 MobiDBLite consensus disorder prediction 149 165 - -
Alju01g2475 424 SUPERFAMILY Homeodomain-like 51 106 IPR009057 -
Alju01g2475 424 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 106 IPR017930 -
Alju01g2475 424 CDD SANT 59 102 IPR001005 -
Alju01g2475 424 SMART sant 56 104 IPR001005 -
Alju01g2475 424 MobiDBLite consensus disorder prediction 1 31 - -
Alju01g2475 424 ProSiteProfiles Myb-like domain profile. 52 102 IPR001005 -
Alju01g2475 424 FunFam protein REVEILLE 6 isoform X1 59 107 - -
Alju01g2475 424 ProSiteProfiles SANT domain profile. 55 106 IPR017884 -
Alju01g2475 424 Gene3D - 59 106 - -
Alju01g2475 424 MobiDBLite consensus disorder prediction 361 389 - -
Alju01g2475 424 MobiDBLite consensus disorder prediction 370 384 - -
Alju01g2475 424 Pfam Myb-like DNA-binding domain 57 100 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2475 Alju-ChrAlju01 23190694 23193760 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Alju01g2475 Myb_DNA-binding 2.2e-13 CL0123