Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2471 ATGGAGTACGGGACTGGAGGCGGTGGTGGGTCCCCCGGGGACCACCACCACCACCACCACCACCTTCACGACGGTTCTGATTCCCAGAGGGACAAGAAGCGATACCACCGTCACACTGCTAACCAGATTCAGAGGCTTGAATCAATGTTCAAGGAGTGCCCCCACCCAGATGAAAAGCAGAGACTACAGTTAAGCAGGGAACTAGGCTTGGCCCCTAGGCAGATCAAGTTTTGGTTCCAGAACCGGAGGACCCAGATGAAGGCCCAGCACGAGAGAGCAGATAACTGTGCTCTCAGATCAGAGAACGACAAGATTCGGTGCGAGAACATAGCTATCAGAGAGGCCCTCAAAAATGTCATTTGCCCTTCTTGTGGTGGCCCTCCTTGTCACGAAGATTCCTACTTCGACGAGCAAAAGCTTCGTTTGGAGAATGCTCAATTGAAAGAAGAGCTTGATAGAGTATCCAGCATTGCGGCTAAATACATAGGGAGGCCAATTTCTCAGCTCCCTCCGGTTCAGCCTATTCATATCTCATCTCTGGACTTGTCAATGTCGAGTTTTGGGGGCCAACCCATGCTGGTTGGTGGTCATGGTCCTTCTCTTGATCTTGATCTTCTTCCTGGGAGTTCTTCGTTGTCGGTTCCCAGCTTGCCTTACCAGGCGGTGGCCGTGGCGGCTTCTTTCTCCGACGTCGATAAGTCCCTCATGTCGGACATGGCCGGCAATGCCATGGACGAGCTGCTCAGGCTTTTGCAGACCAATGAACCCCTTTGGATAAAGTCAAACACAGATGGTAGAGAAGTTCTTAATCTTGACGCCTATGGAAACATGTTTCCTAGATCAAATACTCACATCAAGAATCCCAATATTCGTGCCGAAGCTTCTCGCGATTCTGGAGTTGTGATTATGAATAGCTTGGCCTTGGTCGACATGTTTATGGACCCTAACAAATGGATGGAGCTATTTCCTACTATAGTTTCAATGGCAACTACTATTAAAGTGATATCTTCTGGAATGCTTGGTGGTCATAGTGGCGCTTTACAATTGATGTATGGAGAGCTTCAAGTGCTTACTCCACTGGTTCCAACTAGAGAATTCTACTTCCTGCGATACTGTCAGCAAATTGAGCAAGGTTCATGGGCAATTGTTGATGTTTCTTATGATTTCCCTCAAGATAACCAGTTTGCTCCTCAGTTTCGGTCTCATCGATTCCCGTCTGGCGTCTTGATCCAGGACATGCCTAATGGCTATTCTAAGGTGACTTGGGTTGAACATGTGGAGATTGAAGATAAAACACCAACTCATCGTCTTTACAGAAATCTCATTTACAGTGGCTTGGCTTTTGGAGCAGAAAGATGGCTGGCTACACTTCAAAGAATGTGTGAAAGGTTCGCTTGCTTAATGGTTACCAGCAATTCAACTCGAGATCTTGGAGGAGTGATTCCTTCCCCGGAAGGCAAAAGGAGCATGATGAAACTTGCACAAAGGATGGTGACCAATTTTTGCACATGCCTCGGTGCATCTAACGGCCAAAGATGGACCACACTTTCAGGGCTTAACGAGGTCGGCGTCAGAGTCACCGTCCATAAGAGCACCGAGCCCGGCCAACCAAACGGCGTCGTTCTGAGCGCAGCCACCACCATCTGGCTCCCCATCCCTCCCCAGACCGTCTTCAATTTCTTCAAGGATGAAAGAAAAAGACCTCAGTGGGATGTTCTTTCAAACGGGAGTGCTGTGCAAGAGGTTGCTCATATAGCTAATGGGCCTCACCCTGGGAACTGCATATCTGTTCTTCGAGCCTTCAACACGACTCAGAACAACATGTTGATACTGCAAGAGAGCTGCGTGGACTCATCAGGATCCCTTGTGGTGTACTGCCCTGTTGATCTTCCGATGATCAACATCGCGATGAGCGGCGAGGACCCGTCGAGCATCCCACTGCTTCCGTCCGGGTTCACGGTGGTGCCGGACGGGCAAGTGGAGGTAGGAGTAGACGGGGCGTCGAGCAGCACGAGCACGGGGAGGAGACCAGGTGGGTCACTGATCACAGTGGCGTTTCAGATTCTGGTGAGCAGCCTGCCATCTGCGAAGCTGAACTTGGAGTCAGTGACGACCGTTAATAACCTCATCGGCACCACTGTGCAGCAAATTAAGGCTGCCTTGAATTGTCCTACTTCCTGA 2181 0.5002 MEYGTGGGGGSPGDHHHHHHHLHDGSDSQRDKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRSENDKIRCENIAIREALKNVICPSCGGPPCHEDSYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMSSFGGQPMLVGGHGPSLDLDLLPGSSSLSVPSLPYQAVAVAASFSDVDKSLMSDMAGNAMDELLRLLQTNEPLWIKSNTDGREVLNLDAYGNMFPRSNTHIKNPNIRAEASRDSGVVIMNSLALVDMFMDPNKWMELFPTIVSMATTIKVISSGMLGGHSGALQLMYGELQVLTPLVPTREFYFLRYCQQIEQGSWAIVDVSYDFPQDNQFAPQFRSHRFPSGVLIQDMPNGYSKVTWVEHVEIEDKTPTHRLYRNLIYSGLAFGAERWLATLQRMCERFACLMVTSNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCTCLGASNGQRWTTLSGLNEVGVRVTVHKSTEPGQPNGVVLSAATTIWLPIPPQTVFNFFKDERKRPQWDVLSNGSAVQEVAHIANGPHPGNCISVLRAFNTTQNNMLILQESCVDSSGSLVVYCPVDLPMINIAMSGEDPSSIPLLPSGFTVVPDGQVEVGVDGASSSTSTGRRPGGSLITVAFQILVSSLPSAKLNLESVTTVNNLIGTTVQQIKAALNCPTS 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2471 726 SUPERFAMILY Bet v1-like 230 464 - -
Alju01g2471 726 SUPERFAMILY Bet v1-like 484 718 - -
Alju01g2471 726 Coils Coil 137 157 - -
Alju01g2471 726 Gene3D - 16 103 - -
Alju01g2471 726 CDD homeodomain 32 90 IPR001356 GO:0003677
Alju01g2471 726 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 722 IPR042160 -
Alju01g2471 726 Pfam START domain 240 463 IPR002913 GO:0008289
Alju01g2471 726 SUPERFAMILY Homeodomain-like 11 89 IPR009057 -
Alju01g2471 726 FunFam Homeobox-leucine zipper protein HDG1 19 105 - -
Alju01g2471 726 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Alju01g2471 726 CDD START_ArGLABRA2_like 233 462 - -
Alju01g2471 726 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Alju01g2471 726 MobiDBLite consensus disorder prediction 1 38 - -
Alju01g2471 726 ProSiteProfiles START domain profile. 229 466 IPR002913 GO:0008289
Alju01g2471 726 MobiDBLite consensus disorder prediction 20 34 - -
Alju01g2471 726 Gene3D - 238 462 IPR023393 -
Alju01g2471 726 SMART START_1 238 463 IPR002913 GO:0008289
Alju01g2471 726 FunFam Homeobox-leucine zipper protein GLABRA 2 238 462 - -
Alju01g2471 726 SMART HOX_1 30 93 IPR001356 GO:0003677
Alju01g2471 726 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2471 Alju-ChrAlju01 23104761 23108089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2471 27 726 Homeobox Transcription Factor Family AT1G73360 67.994 0.0 954
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Alju01g2471 START 8.5e-50 CL0209