Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2458 ATGTGTAGTAGAGGCCATTGGAGGCCAGCCGAGGATGAGAAACTTCGAGAGTTGGTGGAGCGTTATGGTCCTCATAATTGGAACGCCATAGCTGAAAAGCTTCGAGGAAGATCAGGGAAGAGCTGCAGGTTGAGGTGGTTTAATCAGCTGGACCCAAGAATAAATAGGACTCCATTCACAGAGGAAGAAGAAGAGAGGCTTGTGGCTTCTCACAGGATCCATGGAAACAGATGGGCTGTGATTGCCAGGCATTTCCCAGGAAGAACTGATAATGCTGTGAAGAACCACTGGCACGTTATGATGGCCAGGATTCACAGAGAAAAATCCAAGCTTTATTCCAAACAACGCCCTCTTCATCATCAAAATCAGATAACTACTTCTACGCCGTCTGATCCTGCTCCTGATCATCATGATCGTCGCACAAACTTATATAATCATACCACAAAGACGACGATGATTAGTCCTATTATTGTTCCTGCTTTCTTTGAGAAATACTATGATAAGCATGCCTTCCCTGCTTATTGTCTTCCTTATTATAATAACCCTTTCCTTCAATTTCCCAACAAGCTTCATCAACAACTTCAACGCCCTTTTTCCTCTTCATCAGTTCTTCATGATAAAAGTGAGTCAATTGAGTTCTATGACTTTCTTCAAGTGAACACTGATTCAAATAATAGAAGCGAGGTGACAGACAATGCAAGAAGGGAAGACGAGGAAGTGAATCAAGACAGTGAACATAATAATGTGGGAGGACGAGGACGAGGTCGAGGACGACAGAACAAAGACGGTGGTGGGGGTGCTCCGTTTATAGATTTTTTGTCTGTTAATGGAAGCTAG 837 0.4337 MCSRGHWRPAEDEKLRELVERYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRTPFTEEEEERLVASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIHREKSKLYSKQRPLHHQNQITTSTPSDPAPDHHDRRTNLYNHTTKTTMISPIIVPAFFEKYYDKHAFPAYCLPYYNNPFLQFPNKLHQQLQRPFSSSSVLHDKSESIEFYDFLQVNTDSNNRSEVTDNARREDEEVNQDSEHNNVGGRGRGRGRQNKDGGGGAPFIDFLSVNGS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2458 278 PANTHER MYB PROTEIN-RELATED 4 134 - -
Alju01g2458 278 SMART sant 55 103 IPR001005 -
Alju01g2458 278 SMART sant 3 52 IPR001005 -
Alju01g2458 278 MobiDBLite consensus disorder prediction 116 131 - -
Alju01g2458 278 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Alju01g2458 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Alju01g2458 278 Pfam Myb-like DNA-binding domain 7 67 - -
Alju01g2458 278 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Alju01g2458 278 MobiDBLite consensus disorder prediction 111 145 - -
Alju01g2458 278 Gene3D - 4 55 - -
Alju01g2458 278 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Alju01g2458 278 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Alju01g2458 278 MobiDBLite consensus disorder prediction 228 259 - -
Alju01g2458 278 FunFam MYB transcription factor 4 55 - -
Alju01g2458 278 MobiDBLite consensus disorder prediction 224 270 - -
Alju01g2458 278 CDD SANT 58 101 IPR001005 -
Alju01g2458 278 CDD SANT 7 48 IPR001005 -
Alju01g2458 278 Gene3D - 57 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2458 Alju-ChrAlju01 22941210 22942629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2458 1 278 MYB Transcription Factor Family AT1G17950 50.719 1.21e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Alju01g2458 Myb_DNA-bind_6 1.1e-16 CL0123