Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2443 ATGTCGTCATCACTCCCAACTTCACATCAGCAGTTCTCCGCCGCCGCAGCCGAGAATAATGCCTCTGCAACTACAAACAAAAGAAAAAGAAGACCGGCCGGAACACCGGATCCGGATGCGGAGGTGGTGTCTTTGTCGCCGAAGACGCTATTGGAATCGGACCGGTACGTGTGCGAGATCTGCAACCAGGGGTTTCAGAGGGACCAGAACCTGCAGATGCACAGGAGGAGGCACAAGGTGCCGTGGAAGCTGCTCAAGAGGGAGACGCCGGTGGTGAGGAAGAGGGTGTTTGTGTGCCCGGAGCCCACCTGCTTGCACCATGACCCGTGCCACGCCCTCGGCGACCTCGTCGGAATCAAGAAACACTTCCGCCGCAAACACAGCAACCACAAGCAATGGGTCTGCCACCGCTGCTCCAAGGCCTACGCCGTCCAGTCCGACTACAAGGCCCATCTCAAGACCTGTGGCACTCGCGGCCATTCCTGTGATTGTGGCCGAGTCTTCTCCAGGGTGGAGAGTTTCATCGAACACCAAGATGCGTGCAATATGGGTCGGCTCCGGTCGCAGCAGCCACAGCAACCAGCGTGTCTGTCTCGAACTGCATCGAGCCCGAGCCCGTCGAGCGAGACCAATTTCAGCGCCGGTCCGGCCTGGCCTACCCCGCCCGGTCTGGTGATACCAAAGCCAACAACAACGGCGGAACCCACATTCTTCAAGAACAATAACAACCCTATTGTTACTGATCAAACCTCGTCCAAAACCAACACCAACAACCAAAGCAGCAACAAGAAACTCCACCCCAACTTGGACCTTCAGCTCTCAACCGCCACGCCCAACGTGGTCGACGACACCCACTCGACGCAGCTACAGCTCTCGATCGGGTCGTCGACGGACATGAGCGACAAAAACGAATCAAACAGGAACAATAATAATTCATCACCAAAGGAGAGCAGTAACAGCAGCGATAAGCCGCCAGGCGCGGTGGCAGCGGCGTTGATGGTGGAGAAAGCGTACGCGGAGGAGGCGAGGAAGGAGGCCAAGAGGCAGATGGAGGCGGCGGAGCAAGAGTTTGCGAACGCCAGGAGATTAAGGCAGCAAGCTCAAGCGGAACTGGATAAAGCATATGCATTGAAAGAGCAAGCCATTAAACAGATCAATTCCACTATGCTTCAGATCACTTGTCATGCTTGTAAGCAACAGTTTCAACAGCAAGCTCATAAATTAATAACGCAAGGTGGTGGCCAAGTATTAGAAGACAACAATAACGGCAAAGATCAAAACCACTAA 1287 0.5478 MSSSLPTSHQQFSAAAAENNASATTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPVVRKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCHRCSKAYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRSQQPQQPACLSRTASSPSPSSETNFSAGPAWPTPPGLVIPKPTTTAEPTFFKNNNNPIVTDQTSSKTNTNNQSSNKKLHPNLDLQLSTATPNVVDDTHSTQLQLSIGSSTDMSDKNESNRNNNNSSPKESSNSSDKPPGAVAAALMVEKAYAEEARKEAKRQMEAAEQEFANARRLRQQAQAELDKAYALKEQAIKQINSTMLQITCHACKQQFQQQAHKLITQGGGQVLEDNNNGKDQNH 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2443 428 SUPERFAMILY beta-beta-alpha zinc fingers 53 79 IPR036236 -
Alju01g2443 428 MobiDBLite consensus disorder prediction 191 215 - -
Alju01g2443 428 MobiDBLite consensus disorder prediction 293 326 - -
Alju01g2443 428 MobiDBLite consensus disorder prediction 1 29 - -
Alju01g2443 428 MobiDBLite consensus disorder prediction 293 324 - -
Alju01g2443 428 FunFam protein indeterminate-domain 12-like 35 103 - -
Alju01g2443 428 Coils Coil 329 384 - -
Alju01g2443 428 SMART c2h2final6 133 160 IPR013087 -
Alju01g2443 428 SMART c2h2final6 97 127 IPR013087 -
Alju01g2443 428 SMART c2h2final6 56 78 IPR013087 -
Alju01g2443 428 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 11 398 IPR031140 -
Alju01g2443 428 MobiDBLite consensus disorder prediction 191 268 - -
Alju01g2443 428 Gene3D Classic Zinc Finger 44 129 - -
Alju01g2443 428 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 78 IPR013087 -
Alju01g2443 428 MobiDBLite consensus disorder prediction 1 45 - -
Alju01g2443 428 MobiDBLite consensus disorder prediction 233 268 - -
Alju01g2443 428 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2443 Alju-ChrAlju01 22638116 22640269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2443 18 405 C2H2 Transcription Factor Family AT2G01940 55.665 5.37e-144 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Alju01g2443 None None None