Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2422 ATGGTTCTTGGATGGCGAAGAAGAAAGAACTGCCGTCGCAAGGACAAGCTTCATCTCGAGCTCGTCGTTCCCAACCACTTCCGGTGTCCGATTTCACTGGATTTAATGAAAGACCCTGTCACATTGTCAACCGGAATCACCTACGATCGTGACAACATCGAAAGGTGGTTCCTTGACGGCAATTTCACCTGCCCTGTTACCAATCAGGTTCTCAGGAGCTTCGATCTCATTCCTAATCACACTCTTCGCATCATGATTCAGGACTGGTGTGTCGAAAATCGACCACATGGGGTCGAGAGAATCCCAACCCCAAGAATTCCCATTTCGCCGGCCCAAGTCGCCGAGCTTCTTCTTCATGTGAAATCGTCGGCAAGGCGTTTGGATCAATATGGTTGTCTTGAATTGGTTCAGAAAATGGAGAAATGGAGTGAAGAGAGCGAGAGGAACAAGAAGTGTATAGTTGAAAATGGAGCTACTGGTGCTCTGGCCTCTGCTTTTCATTCGTTTGCGAATGATTCGATTGAGAAGAATCTTAATGTTTTGGAGGAGATTTTGTCTGCTTTGAATTGGATGTTCCCACTTCAAATGGAAGAAGCCCAGAAATGTTTGGGATCACAAGCTTCGTTACGTTGCATGGTTTGGTTTCTGAAACATCAAGATCTCGCAGGGAAAGAGAAATCGATTGTTGCTCTCAGAGAGCTTTTATCTTTCGGAAACGAAGAACATTTGAATGTTGTGGCAGAAATTGAAGGAGTCAACGAATTATTGGTGGAATTTATCACAAAAAGACTGAGTCCGACCATTACAAAAGCTTCATTAGCTTTAGTTTTCTATATGGTTTCATCGTCTTCTTCTTCCTCAAGCAACAAGATGAAACAGAGATTCATCGAATTGGGGTTGGTCTCTGCTTTATTGGAGATTCTTCTGGATTCAGAAAGAAGCCTTTGTGAGAAGGCTTTGGCAATATTTGATTCACTCTGTTCTTGCAAGGAAGGAAGAGAGAAAGCTTACAGTAACGCGTTGACGATTCCTGTGTTGGTGAAGAAGATACTGAGAGTTTCAGCTTTGGCTACAGAGTGCTCTGTTTCTGCAATATGGAAGCTGTGCAAGAATGGCGGAGAAGAGAAAGACGAAGAAGAAGAAGAAGAAGATGAAGAAGAAGAAGTTATGGTAGAGGCACTGCAAGTTGGGGCGTTCCAGAAGCTTCTGGTAGTGTTGCAGATTGGGTGTGGAGATGAAACGAAGGTGAAAGCAACAGAGCTCCTGAAACTTCTGAATCGATATGGGTCAGGCATGGAGTGTGTAGACTCAGATTTCAAGAACCTCAAGAGATCACATTAA 1341 0.4385 MVLGWRRRKNCRRKDKLHLELVVPNHFRCPISLDLMKDPVTLSTGITYDRDNIERWFLDGNFTCPVTNQVLRSFDLIPNHTLRIMIQDWCVENRPHGVERIPTPRIPISPAQVAELLLHVKSSARRLDQYGCLELVQKMEKWSEESERNKKCIVENGATGALASAFHSFANDSIEKNLNVLEEILSALNWMFPLQMEEAQKCLGSQASLRCMVWFLKHQDLAGKEKSIVALRELLSFGNEEHLNVVAEIEGVNELLVEFITKRLSPTITKASLALVFYMVSSSSSSSSNKMKQRFIELGLVSALLEILLDSERSLCEKALAIFDSLCSCKEGREKAYSNALTIPVLVKKILRVSALATECSVSAIWKLCKNGGEEKDEEEEEEDEEEEVMVEALQVGAFQKLLVVLQIGCGDETKVKATELLKLLNRYGSGMECVDSDFKNLKRSH 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2422 446 CDD RING-Ubox_PUB 24 76 IPR045210 -
Alju01g2422 446 Gene3D - 286 428 IPR011989 -
Alju01g2422 446 PANTHER WDSAM1 PROTEIN 20 434 IPR045185 GO:0061630
Alju01g2422 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 99 IPR013083 -
Alju01g2422 446 SMART Ubox_2 26 89 IPR003613 GO:0004842|GO:0016567
Alju01g2422 446 Gene3D - 139 285 IPR011989 -
Alju01g2422 446 FunFam RING-type E3 ubiquitin transferase 23 94 - -
Alju01g2422 446 ProSiteProfiles U-box domain profile. 22 96 IPR003613 GO:0004842|GO:0016567
Alju01g2422 446 Coils Coil 376 396 - -
Alju01g2422 446 Pfam U-box domain 23 94 IPR003613 GO:0004842|GO:0016567
Alju01g2422 446 SUPERFAMILY ARM repeat 175 386 IPR016024 -
Alju01g2422 446 SUPERFAMILY RING/U-box 22 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2422 Alju-ChrAlju01 22293195 22294535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2422 5 444 U-box Gene Family AT5G37490 43.902 6.65e-115 342