Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2420 ATGCAAAGCGCTCTTTCATGGTTCTCTTTGTCATCACTAATTAACCACAGACTCCAGTTCCATTCCACCAATCTTCTTGGAAAGCATTTTAATATGTGGAAGAAAATGATAACAAAGCTCATGAGCTTCCATAGACGGAGCAGAAGATCAGAAGAAGAACAAGACGATGAAGAAGAAGAAGATCGGAGCTTATCTGTTAATCCCGCTCATCTTTGCCGTAACTTCTTCATTCATCCCCATAATTGGTGGTACGTAGTGTGGAAGCATTTCATTCTAATATGGGCAGTGTACTCATCCTTCTTCACTCCCATGGAGTTTGGATTCTTCAGAGGCTTGCCGGAGGAGATCTTCTTACTCGACATTGCCGGCCAATTTGCTTTCCTCGTCGATATTGTCATCCGATTCTTCCTCGCCTATCGCGATACCTCCTCAAATACCTGGATCTACAATCACCGTCAAATCGCGAAGAGGTATTTGAAGTCTCGGTTCACACTTGATTTTCTGAGTTGTCTGCCTTGGGATTATGTTTATAAGGCTGCTGGCAGGAAAGAGCCAGTGAGGTATCTTCTATGGATCAGGCTGTGGCGAGCATGTAGGGTGATTGAATTTTTTGAGAGGCTGGAGAAAGATCTTAGGATCAATTACCACTGTACTAGGATTGTCAAACTTCTTGTTGTTGAGCTCTATTGCACACACACGGCTGCCTGCATCTTCTATTATCTTGCTACCACTTTGCCCCCCTCTAAGGAAGGTTATACATGGATAGGCAGCTTGACGATGGGTGACTACAGCTACTCAGACTTTAGACATATTAGTCTTTGGAGGCGTTATGTGACAGCACTCTACTTTGCAATTGTTACCATGGTAACTGTTGGCTTTGGAGAAATTCATGCAGTCAATGTCAGGGAAATGATATTTGTCATGATATTTGTTTCCTCTGACATGATTTTGGGTGCTTACCTTCTTGGTAACATGACAGCATTGGTCGTGAAAGGATCAAGAACGGAGAAGTTTAGGGACAAAATGTCTGAACTTATCAAGTACATGAATAAAAATAATTTGGACAAGCAGATAACTAAGGAGATTAGAGGCCATCTGCGCTTACAGTATGACCGTAGTGACACTGAGGCTGCTATGGATGAAGAAATTCCAGTTTCTATCCGCACAAAGATTTCGATGGATTTGTATGAGCAGTTCATTCAGAAAGTTCATCTTTTCAAGGGATGCTCTTCTGGGTTCATTAAACATGTTGCAATCAATGTCCATGAGGAGTTTTTTCTCCCAGGAGAAGTTATTATGGAGCAAGGAGATGTAGTAGATCAACTTTACCTTGTATGCCATGGTGAACTGGATGAACTAAGAAAAGAAGATGATGAAAGAGAAGAGCTAGTTAAGCAATATCAAACCTATGGTTCCTTTGGCGAGGTTTCCTTTCTTTGCAATTTGCCTCAACCTTACATGGTTCGTGCTCGTGAATTTTGCAAAGTTCTGCGTCTAGATAAGATACCCTTCACAGAAACACTCAAGACATACTTCTTAGATGGTTGGGTTATCTTGCAAAATCTTCTTGAGGGAAAAGACTCAGGTCTTCAGTATAAGCTTTTGGAATCAGACTTCACCCTGACAATTGGGAATCGTGAAACAGAACTAGCTATGAGGATTAATTGTGCTGCCTATGAGGGGGATTTCTATCTTTTGAAACATTGGATTGAATCAGGACTAGATCCCAACAGAACTGATTATGATGGAAGATCACCTTTGCATATTTCTGCATCCAAAGGCTATGTAGATATTACTCGCTTTCTTATTGACCAAGGAGTGAATATTGATTTATCAGATAAGTTTGGGAATACTCCCTTGTTTGAAGCCATAAAGAATGGACATGAAGAAGTAGCTTCTTTGCTCGCAAGTAAGGGAGCTACTCTTACTATTGAAGATGCTGGAAGTTTTCTATGCATGACTGTTGCAACAAAGGAACTGGACCTTTTAAGAAAGCTTTTAGCCCATGGTATAGATCCAAATTCTAGAAATTATGATCAACGAACAGCTCTTCACATAGCTGCCTCGGAGGGTTTGTTCACAGTTGCTGAAATGCTCATAGAAGCAGGGGCAAGTGTTTTATCCACTGACAGGTGGGGACATACACCACTTGATGAAGTTCGCATAGGTGGAAATAGGAGCATGATCAGATTGCTTGAAGTAGCAAAAATTTCTCAGCTGGCTGAGGTATCAGATGGTATTCAGGAAACACAAGGTAAGCAGTTAGACATGTATACTTGGACCGAGATAGCAGAAACGCTCGCCTCGCCGTCAAGAGATGGAAGTCCGAAAAAGAAATGCACAGTATTTCCTTTCCACCCACGGGATCACAAAAAAAAGGGAAGAGTAGGAGCAATCCTGTGGGTTCCTGGAAGCATTGAAGAGCTAATAAAGTTGGCAAGAGAACAATTAAACTCTCCCAATGGTTCCTGCATTTTATCTCAGCATGGTGCTGCAATTCTTGATGTAGACATGATCGGCAACGATGAGCAGCTATTTCTATCAAGTGAACCACACACTGAGGGCCGAAGAATAGCAGAATGTTCTACTCATCCCCAATGA 2601 0.4175 MQSALSWFSLSSLINHRLQFHSTNLLGKHFNMWKKMITKLMSFHRRSRRSEEEQDDEEEEDRSLSVNPAHLCRNFFIHPHNWWYVVWKHFILIWAVYSSFFTPMEFGFFRGLPEEIFLLDIAGQFAFLVDIVIRFFLAYRDTSSNTWIYNHRQIAKRYLKSRFTLDFLSCLPWDYVYKAAGRKEPVRYLLWIRLWRACRVIEFFERLEKDLRINYHCTRIVKLLVVELYCTHTAACIFYYLATTLPPSKEGYTWIGSLTMGDYSYSDFRHISLWRRYVTALYFAIVTMVTVGFGEIHAVNVREMIFVMIFVSSDMILGAYLLGNMTALVVKGSRTEKFRDKMSELIKYMNKNNLDKQITKEIRGHLRLQYDRSDTEAAMDEEIPVSIRTKISMDLYEQFIQKVHLFKGCSSGFIKHVAINVHEEFFLPGEVIMEQGDVVDQLYLVCHGELDELRKEDDEREELVKQYQTYGSFGEVSFLCNLPQPYMVRAREFCKVLRLDKIPFTETLKTYFLDGWVILQNLLEGKDSGLQYKLLESDFTLTIGNRETELAMRINCAAYEGDFYLLKHWIESGLDPNRTDYDGRSPLHISASKGYVDITRFLIDQGVNIDLSDKFGNTPLFEAIKNGHEEVASLLASKGATLTIEDAGSFLCMTVATKELDLLRKLLAHGIDPNSRNYDQRTALHIAASEGLFTVAEMLIEAGASVLSTDRWGHTPLDEVRIGGNRSMIRLLEVAKISQLAEVSDGIQETQGKQLDMYTWTEIAETLASPSRDGSPKKKCTVFPFHPRDHKKKGRVGAILWVPGSIEELIKLAREQLNSPNGSCILSQHGAAILDVDMIGNDEQLFLSSEPHTEGRRIAECSTHPQ 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2420 866 PRINTS EAG/ELK/ERG potassium channel family signature 488 496 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g2420 866 PRINTS EAG/ELK/ERG potassium channel family signature 229 239 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g2420 866 PRINTS EAG/ELK/ERG potassium channel family signature 321 330 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g2420 866 PRINTS EAG/ELK/ERG potassium channel family signature 120 130 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g2420 866 PRINTS EAG/ELK/ERG potassium channel family signature 277 294 IPR003938 GO:0005249|GO:0006813|GO:0016020
Alju01g2420 866 ProSiteProfiles Ankyrin repeat region circular profile. 582 614 - -
Alju01g2420 866 SUPERFAMILY Voltage-gated potassium channels 78 330 - -
Alju01g2420 866 Gene3D - 551 734 IPR036770 -
Alju01g2420 866 Pfam Ankyrin repeats (3 copies) 556 646 IPR002110 GO:0005515
Alju01g2420 866 SMART cnmp_10 405 523 IPR000595 -
Alju01g2420 866 PANTHER POTASSIUM CHANNEL AKT1 54 850 IPR045319 GO:0005249|GO:0006813
Alju01g2420 866 CDD CAP_ED 405 511 IPR000595 -
Alju01g2420 866 ProSiteProfiles Ankyrin repeat profile. 582 614 IPR002110 GO:0005515
Alju01g2420 866 Pfam Cyclic nucleotide-binding domain 425 510 IPR000595 -
Alju01g2420 866 Pfam Ion transport protein 86 327 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Alju01g2420 866 SUPERFAMILY cAMP-binding domain-like 333 522 IPR018490 -
Alju01g2420 866 Gene3D - 85 331 - -
Alju01g2420 866 ProSiteProfiles Ankyrin repeat profile. 615 647 IPR002110 GO:0005515
Alju01g2420 866 ProSiteProfiles KHA domain profile. 779 865 IPR021789 -
Alju01g2420 866 SMART ANK_2a 679 708 IPR002110 GO:0005515
Alju01g2420 866 SMART ANK_2a 646 675 IPR002110 GO:0005515
Alju01g2420 866 SMART ANK_2a 582 611 IPR002110 GO:0005515
Alju01g2420 866 SMART ANK_2a 549 578 IPR002110 GO:0005515
Alju01g2420 866 SMART ANK_2a 615 644 IPR002110 GO:0005515
Alju01g2420 866 SUPERFAMILY Ankyrin repeat 553 732 IPR036770 -
Alju01g2420 866 FunFam Potassium channel SKOR 85 330 - -
Alju01g2420 866 Pfam Ankyrin repeats (many copies) 666 718 IPR002110 GO:0005515
Alju01g2420 866 ProSiteProfiles Ankyrin repeat region circular profile. 679 711 - -
Alju01g2420 866 ProSiteProfiles cAMP/cGMP binding motif profile. 405 508 IPR000595 -
Alju01g2420 866 FunFam Potassium channel KAT2 393 529 - -
Alju01g2420 866 Pfam KHA, dimerisation domain of potassium ion channel 778 847 IPR021789 -
Alju01g2420 866 Gene3D Jelly Rolls 394 512 IPR014710 -
Alju01g2420 866 Gene3D Helix hairpin bin 333 393 - -
Alju01g2420 866 ProSiteProfiles Ankyrin repeat profile. 679 711 IPR002110 GO:0005515
Alju01g2420 866 ProSiteProfiles Ankyrin repeat region circular profile. 615 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2420 Alju-ChrAlju01 22271779 22279620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2420 75 711 Ion Channels AT5G37500 59.484 0.0 830