Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2384 ATGACACCATCGATAGTCGTCTTCACTTGTTGCTCCGTCGGTTTTGAGAAGGGGAATTTTCTCTCACCCCCTGCAGCCTTCGCGGTCAAGCCCATCCTCTTGCCGAGACATCATTGCTGTCACAACATGCATTCGCGACCGTCTGCCTTTGATGCTCTAATGTCCGGGTCTCATGCCGCGGCCAAGAAGCAGCCCCAATCACGGTCTCCCCATAAACGAAAAACCATGAATTCTAATTCAACCCCCAGTAACGATATTAAATGCGCTGATATTAGAGATTCCGAGCCGAAGAGAATGCGCATTGTAGGTTCCCCGGAGAAGGTTACAGAACTGAAGAAAAAAGTTTGTCTCTTGAAGAAGAAGCCTGCAGATTTTGACCCTACTTCGATATCTTGTTGGGACAAGGGTGAACCTGTGCCCTTTCTATTTCTCTGTTTGGCATTTGATAGGGTTGCAGAAGAAACTGGACGGATTGTGAGTACAGATATAGTGTGCAATATGCTGGGGACTGTCATGAACACTACACCCGAGGATCTGGTGGCTGTTGTTTATCTTTTGGCAAATAAGATTGCTCCTTCACATAAAGGGTTGAAATTGGGAATAGGGGATGCTTCAATTATTAAGGCGCTTGCAGAGGCATGTGGAAGATCTAAGGTGCAGATAAAAAATCAGTATAAGGAAAAAGGTGATTTGGGCCTTGTTGCCAAAGCAAGTCGATCATCTCAACCAATGATGCGGAAGCCTGATCCATTAACTATTAGGAAGGTTTTTGACACCTTTCGTCTTATTGCCGAGGAATCTGGTGTAGACAGCCAAGGGAAGAAAGAGAATCACATCAAGGGACTTCTTGTTGCTGCAACTGACTGTGAACCTCAGTATCTAATTCGTCTGCTTCAGTCAAAGTTGCGAATTGGGTTTGCTGAGCAAACTCTCTTAGCTGCATTGGGCCAGGCTGCAGTGTACATGGAAGGACATTCTGTACCTCCTGCTGAAGTTCAGTCCCCTTTAGAAGAGGCTGCAAAGATTGTTAAACAGGTGTATTCTGTTCTTCCTGTGTATGATGAAATAATTTCTGCATTGCTTAGTGGTGGTGTATGGAAACTTCCAGAGACATGCAATTTTACTCTTGGTGTTCCGGTTGGACCTATGTTGTCTAAAGCATCTAAGGGTATTACTGAAGTTCTAAATAAATTCCAGGATGTAGAATTTACTTGTGAATACAAATATGATGGAGAGCGTGCCCAGATACATTACATGGATAATGGATCAGTTGAGATTTACAGTAGAAATGCTGAACAGAACACTGGAAAGTTTCCTGATGTTGTTGCTGCTATTTCAAGGCTAAAGAAATTGTCTGTATCATCATTCGTTCTTGATTGTGAACTTGTGGCTTATGACCGGGGAAAAAAGAAAATTCTTCCTTTTCAGGTTCTCAGCGGTCGAGCTCGGAAAAATGTTTCTATGAGTGATATAAAAGTCGATGTATGCATATTTGCCTTTGATATCTTGTATCTCAATGGCAAGCCACTACTTCAAGAAACCCTAAAAATCCGGAGAGAGCGTCTCTATGCCTCTTTCAAGGAAGAACCTGGATTTCTTCAGTTTGCAACAGCAATAACATCAAATGATGTTGAGGAAATACAGAAGTTTCTCGATGCAGCAGTTGATGCTAGTTGTGAGGGTTTAATTATCAAAACTTTATATGAAGATGCTACGTATGAACCTTCCAAGCGGTCACTCAACTGGCTAAAACTGAAGAAAGACTATCTTGAAAATATTGGGGACTCGCTGGATTTGGTTCCTATTGCTGCTTTTCATGGTCGTGGGAGACGTACAGGGGTCTATGGAGCTTTTCTCCTTGCTTGCTATGACAGCAATAATGAAGAATTTCAAAGCATTTGTAAAATAGGCACGGGATTCTCAGAGGCAATGCTTGAAGAGCGTTCTGCTAGTCTTCGTTCCAAAGTGATTCCCAAACCAAAGCCTTATTATCAATATGCAGAGACAATCAATCCTGATGTATGGTTTGAAGCTTCTGAGGTGTGGGAGGTGAAAGCAGCGGACTTGACCATTAGCCCTGTTCACCGTGCTGCAGTAGGCATAGCAGATTCGGATAAGGGCATATCTCTTCGGTTTCCTCGTTTAGTTCGAGTTCGGGATGACAAAGCTCCTGAACAAGCCTCTTCATCTGAGATGGTTGCTGAAATGTATTCTGCTCAAAAGCACAATCTCCCAAACAACCCGGATGATGAAGAGAATTGA 2262 0.431 MTPSIVVFTCCSVGFEKGNFLSPPAAFAVKPILLPRHHCCHNMHSRPSAFDALMSGSHAAAKKQPQSRSPHKRKTMNSNSTPSNDIKCADIRDSEPKRMRIVGSPEKVTELKKKVCLLKKKPADFDPTSISCWDKGEPVPFLFLCLAFDRVAEETGRIVSTDIVCNMLGTVMNTTPEDLVAVVYLLANKIAPSHKGLKLGIGDASIIKALAEACGRSKVQIKNQYKEKGDLGLVAKASRSSQPMMRKPDPLTIRKVFDTFRLIAEESGVDSQGKKENHIKGLLVAATDCEPQYLIRLLQSKLRIGFAEQTLLAALGQAAVYMEGHSVPPAEVQSPLEEAAKIVKQVYSVLPVYDEIISALLSGGVWKLPETCNFTLGVPVGPMLSKASKGITEVLNKFQDVEFTCEYKYDGERAQIHYMDNGSVEIYSRNAEQNTGKFPDVVAAISRLKKLSVSSFVLDCELVAYDRGKKKILPFQVLSGRARKNVSMSDIKVDVCIFAFDILYLNGKPLLQETLKIRRERLYASFKEEPGFLQFATAITSNDVEEIQKFLDAAVDASCEGLIIKTLYEDATYEPSKRSLNWLKLKKDYLENIGDSLDLVPIAAFHGRGRRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSASLRSKVIPKPKPYYQYAETINPDVWFEASEVWEVKAADLTISPVHRAAVGIADSDKGISLRFPRLVRVRDDKAPEQASSSEMVAEMYSAQKHNLPNNPDDEEN 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2384 753 MobiDBLite consensus disorder prediction 720 753 - -
Alju01g2384 753 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 64 745 - -
Alju01g2384 753 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 406 414 IPR016059 GO:0003909
Alju01g2384 753 Pfam ATP dependent DNA ligase domain 382 586 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju01g2384 753 Pfam ATP dependent DNA ligase C terminal region 611 722 IPR012309 GO:0003910|GO:0006281|GO:0006310
Alju01g2384 753 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 122 373 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju01g2384 753 MobiDBLite consensus disorder prediction 56 89 - -
Alju01g2384 753 FunFam DNA ligase 411 536 - -
Alju01g2384 753 Gene3D DNA ligase/mRNA capping enzyme 411 536 - -
Alju01g2384 753 SUPERFAMILY Nucleic acid-binding proteins 594 740 IPR012340 -
Alju01g2384 753 Gene3D - 118 384 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju01g2384 753 Pfam DNA ligase N terminus 140 315 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Alju01g2384 753 CDD Adenylation_DNA_ligase_I_Euk 371 589 - -
Alju01g2384 753 CDD OBF_DNA_ligase_I 594 737 - -
Alju01g2384 753 Gene3D - 591 751 IPR012340 -
Alju01g2384 753 MobiDBLite consensus disorder prediction 71 87 - -
Alju01g2384 753 ProSitePatterns ATP-dependent DNA ligase signature 2. 560 586 IPR016059 GO:0003909
Alju01g2384 753 FunFam DNA ligase 117 384 - -
Alju01g2384 753 FunFam DNA ligase 591 750 - -
Alju01g2384 753 NCBIfam ATP-dependent DNA ligase 199 737 IPR000977 GO:0003910|GO:0005524|GO:0071897
Alju01g2384 753 ProSiteProfiles ATP-dependent DNA ligase family profile. 488 624 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Alju01g2384 753 Gene3D - 392 590 - -
Alju01g2384 753 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 374 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2384 Alju-ChrAlju01 21636345 21643940 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2384 36 747 Core DNA Replication Machinery Family AT1G08130 67.473 0.0 1032