Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2316 ATGATGATAACAGAGAAAGTTTTGTTTCATTTCATCTCTCATCTCTCTTCGCTCTTCTCTCTTCTCTCTCTGGGAATCATGCCTGTTGTTTCTGATACTTCTGCAACTGCTGAACGCATGAAATGCAGAAGACCAAGAAGCCATTTTGGTCATCTCATTCAAGAAGCAGATCCGAATCCGCCTATCCCATCAATAATCGAGTTCACTCGATGCAAGTCAACCATCTCGTCTCTTCTTCTCTCTACTTTCTCTAACAACTCGACCAATGAGAGTATACAGGGCAACGGCATCAACATCGCCGGCAGTGGCCGTAGCAAGAAGAAGAACAATTTCTCGGCGGCTGCAACCTTCAGAGGGCTCGGATGCACCGCCGGTGCGTCGCAGCAGGTTTCCGTTCCGGCGGTGATTCGGACGTCGGCGGACTGGCAAGGAAAGAAAGCTAGGAAGAAGAAGCACAAAAGAAATAGCAACAAGACCTGCCCTGGGGTTCTTGATGGTTCTGGTTCTGCTAATTGCGTTGATTTTCAAGATGTTTGGTGTGGTCCTGGAATTGGGTTTTCTGCAGATGCTGCTGCTTCTGTTGATTGCGTCGTTGCGAGGAAGAATGTTTCTTCAAGAGGCAAGATTGATGTGGAGAGGATGACTCACAGAGAGCGAGTATCTTATCTTGGAAGACGAACAGTTAACCCAGAAACAATCTCGTTTCTGGATAATGATCCTGATATCTTCCCAACCCGCCCTCCTGCTCCTGATCCCTATGCAACTTCAAGATATTATCGTCATGTTCGACATCCTTCATCTGAAGGTTTCGCTGAGATAATGATGCTTCAAGGAGGTCTGCTAATGGGAGGAATATTAGATTCACATGACCAATTTAGAGACTGGAGACTTGATGTTGATAACATGTCATATGAGCAACTGCTTGAGCTTGAGGAGAAGATTGGTTATGTCAACACTGGTCTTAAAGAAGACGAGATAGGATGCCACATAAGGAAAATTCGATATCCATTTTTGAGTGAAGCATTGAAACACCATATTAACAAAAAATGCAGCATTTGTCAGGAAGAATATGAAGGAGATGATGAGGTGGGGAAGCTAAATTGTGAACACAATTATCACTTTGAGTGCATCAGACAATGGCTTGCACAGAAAAACTTCTGCCCTGTCTGTAAGCAAGAAGTTGTGGTTCGTCATTAG 1197 0.4453 MMITEKVLFHFISHLSSLFSLLSLGIMPVVSDTSATAERMKCRRPRSHFGHLIQEADPNPPIPSIIEFTRCKSTISSLLLSTFSNNSTNESIQGNGINIAGSGRSKKKNNFSAAATFRGLGCTAGASQQVSVPAVIRTSADWQGKKARKKKHKRNSNKTCPGVLDGSGSANCVDFQDVWCGPGIGFSADAAASVDCVVARKNVSSRGKIDVERMTHRERVSYLGRRTVNPETISFLDNDPDIFPTRPPAPDPYATSRYYRHVRHPSSEGFAEIMMLQGGLLMGGILDSHDQFRDWRLDVDNMSYEQLLELEEKIGYVNTGLKEDEIGCHIRKIRYPFLSEALKHHINKKCSICQEEYEGDDEVGKLNCEHNYHFECIRQWLAQKNFCPVCKQEVVVRH 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2316 398 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 329 396 IPR013083 -
Alju01g2316 398 SUPERFAMILY RING/U-box 349 396 - -
Alju01g2316 398 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 159 394 IPR045191 GO:0061630
Alju01g2316 398 FunFam E3 ubiquitin-protein ligase rnf12-A 317 396 - -
Alju01g2316 398 ProSiteProfiles Zinc finger RING-type profile. 350 391 IPR001841 -
Alju01g2316 398 SMART ring_2 350 390 IPR001841 -
Alju01g2316 398 Pfam Ring finger domain 349 391 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2316 Alju-ChrAlju01 20688665 20693031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2316 28 305 C3H Transcription Factor Family AT1G73760 39.735 1.18e-50 170