LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Alju01g2286	ATGACCAATTCTTTTGAAGTAAAATTGGGACAAGGTGGTTATGGTGTGGTATACAAAGGAAAATTACTAGATGGACAGCTTGTTGCAGTGAAGTTATTGAAGCTATCCAAAGGAAATGGAGAAGAATTTATCAATGAGGTTGCTAGTATCAGTAGAACTTCTCACGTCAATGTTGTTACCCTCCTTGGATTTTGTTTGGAAGGCCATAAAAAGGCTCTCATATATGAGTTTATGCCCAATGGATCTCTTGACAAGTTTATTAACAAAAAGACAGACAATGTTGGTATGTTATTAACTTGGGAAAATTTGTACCAAATTGCAATCGGTATAGCTCGAGGGTTGGAATACTTACATAGAGGATGCAACACTCGAATTCTACATTTTGACATAAAGCCACATAACATCCTTTTGGATGAAAAATTTTGTCCCAAAATCTCGGACTTTGGGCTTTCTAAGCTTTGTTTGGAAAAAGAAAGCATAATTTCAATTTCCGAAGCTAGAGGGACTGTGGGGTATCTTGCTCCAGAAATTTGGAATAGAAATATTGGTGGGGTTTCACATAAGTCAGATGTCTACAGTTATGGAATGATGCTGTTAGATATAGTGGGAGGGCGAAAGAACATGAATGCTGAAATTAATTGCTCAACTGAGAATTATTTTCCAGATTGGATATATAATAAACTTGAGCAAGATAGCACTTTGGGAAGTGAAGGAGCCAACAACATTGAGGAAAATGATGTCGCAAAAAGAATTACTATTGTGGGTTTGTGGTGCATTCAAACATTTCCAACTCAAAGACCTCGGATAAATAGAGTGATTGAAATGTTAGAAGGAAGTTTGAATTCACTAGAAATGCCTCCAAAACCTGTCCTGTCTTCGCCTCCAAGATCAGAATTAGAGTACACCTCCACTACCAATACCACCACCACCACATAG	936	0.375	MTNSFEVKLGQGGYGVVYKGKLLDGQLVAVKLLKLSKGNGEEFINEVASISRTSHVNVVTLLGFCLEGHKKALIYEFMPNGSLDKFINKKTDNVGMLLTWENLYQIAIGIARGLEYLHRGCNTRILHFDIKPHNILLDEKFCPKISDFGLSKLCLEKESIISISEARGTVGYLAPEIWNRNIGGVSHKSDVYSYGMMLLDIVGGRKNMNAEINCSTENYFPDWIYNKLEQDSTLGSEGANNIEENDVAKRITIVGLWCIQTFPTQRPRINRVIEMLEGSLNSLEMPPKPVLSSPPRSELEYTSTTNTTTTT	311

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Alju01g2286	311	SUPERFAMILY	Protein kinase-like (PK-like)	7	277	IPR011009	-
	Alju01g2286	311	Pfam	Protein tyrosine and serine/threonine kinase	6	276	IPR001245	GO:0004672\|GO:0006468
	Alju01g2286	311	Gene3D	Phosphorylase Kinase; domain 1	1	77	-	-
	Alju01g2286	311	FunFam	PR5-like receptor kinase	78	288	-	-
	Alju01g2286	311	ProSiteProfiles	Protein kinase domain profile.	3	280	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g2286	311	SMART	serkin_6	3	262	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Alju01g2286	311	MobiDBLite	consensus disorder prediction	296	311	-	-
	Alju01g2286	311	ProSitePatterns	Protein kinases ATP-binding region signature.	9	31	IPR017441	GO:0005524
	Alju01g2286	311	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	125	137	IPR008271	GO:0004672\|GO:0006468
	Alju01g2286	311	MobiDBLite	consensus disorder prediction	284	311	-	-
	Alju01g2286	311	PIRSF	ILK	3	285	-	-
	Alju01g2286	311	Gene3D	Transferase(Phosphotransferase) domain 1	78	286	-	-
	Alju01g2286	311	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	1	296	IPR045874	GO:0004672

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Alju01g2286	Alju-ChrAlju01	20291481	20292416	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Alju01g2286	1	304	Receptor kinase-like Gene Family	AT1G66910	58.632	1.59e-127	377

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Alju01g2286		PK_Tyr_Ser-Thr	1.3e-43	CL0016