Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2258 ATGGAGGAAAATAATCTACCTCCTGGATTCAGATTCCATCCAACGGACGAAGAGCTCGTAAATTATTATCTAAAAAGTAAAGTTTGTGATGCTAATGGCTTCACTTGCAAAGCTATAGCAGTGGTTGATCTCAACAAGTCTGAACCTTGGGACCTTCCAGGTAAGGCATCGATGGGAGAGAAGGTATGGTATTTCTTCAGTTTAAAAGATAGGAAATACCCAACAGGACTTCGAACCAACCGAGCAACAGAATCTGGCTACTGGAAAACCACCGGCAAAGACAAACACATCTTCCACGGCGGCGCTTTGGTCGGCTTCAAGAAAACCCTCGTCTTCTACCATGGCAGAGCTCCTCGTGGCCTCAAAACCAATTGGGTTATACATGAATATCGCCTACATAATAATATGCCCCATTTCACACCCTCCAAGGAAGAATGGGTTGTTTGCAGGGTGTTCCAAAAGAGCGTATCAGCAGCCAAAAAACCTCATCAGGAGATGACATCATCATCTTTAGATTCACCTAATTGCGATGCAACCTCAATGGTGAACGAACTGGGTGACGTGGAACTTGGTAATTTTAGTACCAGTCTCTCAAATTCCTCAACAGGATTCATCACAAACAATATTAATAACGGCGATCACAGACACAGTAATAATATAAACACACCGATGAACTTGATGAGCAATTATTGGTCATCGCCTGCATTAACAGACCAAGTTCCCTCTCTTGTTCCGTGGCCTAATAATAATAGTGCAGCTTACTCTCGAGGGTTAATGCTTAATAATCCCAATCTGTCTTCTGTGAACTCATTGCTTCTCAAAGCTTTGCAGCTCAAGAGCTATCATCAGCAGCAGCAAGCTAATGATCACTTTGTTGCATCATCGTCTCAAGCACTTTCCAACGTTGGAGGACGAACCACTGATCATGATCATGTTATCTCAAATCCCAGTGCTTCTCAGCAGCACCAACAACCCTTCAATCTCGACTCCGTTTGGTGTCCAGATGTCTCCACAACATAACTTGCATTTGCATACGCCACCGTTCACTTGTTTCCTGCGTTAGTGACAATGGCGGGAAAACAAATTTCTGGCGACGGCTTGTCGGCGAACCTCGCCGGGATGTCCAAGAACCAACTATATGATATCATGTCTCAGATGAAGAATCTAATCGAACAAAACCAGCAGCAAGCGAGGCAGATCCTCATTCAGAATCCGATGTTAACTAAAGCGCTTTTTCAGGCACAAATTATGCTTGGAATGGTGCAGCCCCCTCCGGCGGTTCCGAAAATTCAGCCAACAGTCTCACAGAGCACTCAGCAGCCAGTACAGTTGACGCAACAGCCAAACATTCAGCCTGCTCCATTTTTGCCTGGTCAAGGAGGTCTACATGATCAAGCAAGTGTATCTCAAAACCAAATTCCTCCAAGGAAACTCCAAAACCAACCTCCGGTGCCTATGTCATCTGCTGCTATCCCTTCAGCAAGTCATCAATCTCAGCCCATGCCTGCACATTCTTTGCAGGTGCCACAGCAACCTAAAGGACATCCAAATCCCCAAATGGCCCATGTGTCTCTTCCACAATCACCACAACTTCCTAATGTCCCTCCATCTTCTCTACATTCATCTTCACAGCCCCATCAAAACCAAATTCCAAATGTTTCCACTCAATTGCAGCAACCATTGCAGGCACCTGGATTTCCACATATGCCCCTGCAACCACCAATGCAATCACAGCCCAGACCACCTTCAGGACCCAACTTCCATCACCAGTATCCCCCACAAATGGGTGCCAATATAGGTTTTCCACATGCCAGTGGTCCTCACAATCTTCCACAACCCATGTTTCATCCAGGTGCGAAGCCAGCAAGTGTTGGACCATCATTTCCACAGGGCCTGACTCCAATTCCAAGTCAACCACCTACCCAGTCACCTTATCAGGTTGGGGGAGCTGGAAATGCAGCGCCCGTTGATAGAGGGTCTTCCAGGATACCTGGTCTCTCGGAAAACATGACACAGCTTTCCGGTCCTTCAGGACCTCCATCATTAGTTCCTGGTCAGATGGGCGTTGGCAATCAGCCTCTTAGGCCTCCTTCTTTGACACCTGAGATGGAGAAGGCACTACTTCAGCAGGTCATGAGCCTCACCCCAGAGCAGATAAATCTCCTGCCTCCAGAACAAAGGAATCAAGTGCTACAGCTACAACAAATGTTGCGCCAATGA 2220 0.4667 MEENNLPPGFRFHPTDEELVNYYLKSKVCDANGFTCKAIAVVDLNKSEPWDLPGKASMGEKVWYFFSLKDRKYPTGLRTNRATESGYWKTTGKDKHIFHGGALVGFKKTLVFYHGRAPRGLKTNWVIHEYRLHNNMPHFTPSKEEWVVCRVFQKSVSAAKKPHQEMTSSSLDSPNCDATSMVNELGDVELGNFSTSLSNSSTGFITNNINNGDHRHSNNINTPMNLMSNYWSSPALTDQVPSLVPWPNNNSAAYSRGLMLNNPNLSSVNSLLLKALQLKSYHQQQQANDHFVASSSQALSNVGGRTTDHDHVISNPSASQQHQQPFNLDSVWCPDVSTTXLAFAYATVHLFPALVTMAGKQISGDGLSANLAGMSKNQLYDIMSQMKNLIEQNQQQARQILIQNPMLTKALFQAQIMLGMVQPPPAVPKIQPTVSQSTQQPVQLTQQPNIQPAPFLPGQGGLHDQASVSQNQIPPRKLQNQPPVPMSSAAIPSASHQSQPMPAHSLQVPQQPKGHPNPQMAHVSLPQSPQLPNVPPSSLHSSSQPHQNQIPNVSTQLQQPLQAPGFPHMPLQPPMQSQPRPPSGPNFHHQYPPQMGANIGFPHASGPHNLPQPMFHPGAKPASVGPSFPQGLTPIPSQPPTQSPYQVGGAGNAAPVDRGSSRIPGLSENMTQLSGPSGPPSLVPGQMGVGNQPLRPPSLTPEMEKALLQQVMSLTPEQINLLPPEQRNQVLQLQQMLRQ 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2258 739 FunFam Cleavage stimulation factor subunit 2 698 739 - -
Alju01g2258 739 MobiDBLite consensus disorder prediction 423 700 - -
Alju01g2258 739 Gene3D - 700 739 IPR038192 -
Alju01g2258 739 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN 357 739 - -
Alju01g2258 739 MobiDBLite consensus disorder prediction 463 514 - -
Alju01g2258 739 Pfam Hinge domain of cleavage stimulation factor subunit 2 362 423 IPR025742 -
Alju01g2258 739 ProSiteProfiles NAC domain profile. 6 154 IPR003441 GO:0003677|GO:0006355
Alju01g2258 739 SUPERFAMILY NAC domain 3 154 IPR036093 GO:0003677|GO:0006355
Alju01g2258 739 MobiDBLite consensus disorder prediction 664 679 - -
Alju01g2258 739 Pfam No apical meristem (NAM) protein 7 132 IPR003441 GO:0003677|GO:0006355
Alju01g2258 739 Pfam Transcription termination and cleavage factor C-terminal 705 739 IPR026896 GO:0031124
Alju01g2258 739 Gene3D - 357 425 - -
Alju01g2258 739 MobiDBLite consensus disorder prediction 292 321 - -
Alju01g2258 739 MobiDBLite consensus disorder prediction 566 588 - -
Alju01g2258 739 MobiDBLite consensus disorder prediction 521 562 - -
Alju01g2258 739 FunFam NAC domain-containing protein 100-like 15 158 - -
Alju01g2258 739 MobiDBLite consensus disorder prediction 431 453 - -
Alju01g2258 739 Gene3D NAC domain 15 158 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2258 Alju-ChrAlju01 19963715 19973548 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2258 3 332 NAC Transcription Factor Family AT3G18400 50.440 5.63e-90 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Alju01g2258 NAM 7.8e-37 No_clan