Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2247 ATGAAAGCAGCCAATGCATTGGGAGCTAAAACTGCGAGAGCTTGCGATAGCTGCCTTCGCCGGCGGGCTCGTTGGTTTTGCGCAGCCGATGACGCTTTCTTATGCCACGGCTGTGACAATCTTGTTCACTCTGCCAATCAGTTAGCCAGCAGACATGAAAGGGTTCGTCTTCAAACCGCTTCGTCGTCCTCCAAGAAGGCTACCACATCGCAAGTATGGTATAGTGGATTCGCACGCAAGGCAAGAACCCCACGTCATAAAAGCAAGCAGTTGCTATTATTGGATCAGCAAAAATCTAAACTTGAGGAAGAGGAAGCGATTTTTAATAGTACTCTTCCCGTCGTGCCGGAGCTCGAAGAAGGTGGCGGTGGGCTGGACGAGAGCGACGAGCGGTTGCTTTGCCGGGTTCCGGAGTTTGATCCGTTCGAAGATGAGCTTTGTAATATTTACAGTGAAGTTGCGGAAGAGAGGCTGGACGATGTCGTGACGATGAAGAAGAAAGATTATGTGAATAATAATGGTGCTGATGATGAAGAAGGAATAACATGTGACTTAGACAGTTTTTCGGAGTTTCTCGCGTCGGATATGGATCTTGCAGAGTTTGCTGCTGATGTTGAAAGCTTACTGGAAAGTGGGATTGATGATGAAAGTGCAGGAGCAGAACTGTTGGATTGTAAACAAGAAGAAAAGATGGAAGCGTTAGAGGGTGCTGTAGGGTCTGCAGACAAAAATAATGCGATGGTAAAGATTAAGGATGAACAAGTAATTGAAGCTAATAACATGGTCGTAGGTATGACAAGTGAGACCTTAAATTGGAACACAACAACACAGACAATTAATCATGAGGGATCATCATCAGCAGAAGAAGAGGAAAAGAAGGTGGAGACGAAGGCAAAGATCTTTTTGAGGCTAAACTACGAGGATGTGATAAGTGCTTGGGCAAGTCAAGGTTGTCCCTGGACAACTGGAAACCCTCCTCAGTTCAACTCTAATGACTTCTGGCTTCACTGCTTGGGTTCGAGCGGAGGAGATGTTCAACAGTGCTGTTATGGGGAAATTGGTGGGATTTTGAAGGGACAAATAGATGGGGGAAGAGAGGCAAGAGTGTCGAGGTACAGAGAGAAGCGAAGAACACGTTTATTTGCGAAGAAAATAAGGTACGAAGTGAGGAAACTGAACGCAGAAAAAAGACCACGTATGAAAGGTCGATTTGTGAAGAGGACGTCCTTTGTTGGAACCACTGCTTTGCCTGCTGCTGCTTCTTCTCACTGA 1272 0.4607 MKAANALGAKTARACDSCLRRRARWFCAADDAFLCHGCDNLVHSANQLASRHERVRLQTASSSSKKATTSQVWYSGFARKARTPRHKSKQLLLLDQQKSKLEEEEAIFNSTLPVVPELEEGGGGLDESDERLLCRVPEFDPFEDELCNIYSEVAEERLDDVVTMKKKDYVNNNGADDEEGITCDLDSFSEFLASDMDLAEFAADVESLLESGIDDESAGAELLDCKQEEKMEALEGAVGSADKNNAMVKIKDEQVIEANNMVVGMTSETLNWNTTTQTINHEGSSSAEEEEKKVETKAKIFLRLNYEDVISAWASQGCPWTTGNPPQFNSNDFWLHCLGSSGGDVQQCCYGEIGGILKGQIDGGREARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRTSFVGTTALPAAASSH 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2247 423 Pfam B-box zinc finger 12 55 IPR000315 GO:0008270
Alju01g2247 423 SMART bboxneu5 10 57 IPR000315 GO:0008270
Alju01g2247 423 ProSiteProfiles Zinc finger B-box type profile. 10 57 IPR000315 GO:0008270
Alju01g2247 423 Pfam CCT motif 365 407 IPR010402 GO:0005515
Alju01g2247 423 CDD Bbox1_BBX-like 14 57 - -
Alju01g2247 423 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 3 409 - -
Alju01g2247 423 ProSiteProfiles CCT domain profile. 365 407 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2247 Alju-ChrAlju01 19874263 19876575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2247 4 407 C2C2-CO-like Transcription Factor Family AT1G25440 43.396 1.09e-91 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Alju01g2247 zf-B_box 5e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Alju01g2247 01 19874263 19876575 Alju01g2247 01 19874263 19876575 ECH