Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2170 ATGTCGTTTTCCCCTCCTATTTCCTACAAGTTTAAGAAGCCACCAATATTTGGATTGTTTGCTGGCAAAGCTAAACCTATCAACAACCAAGAAATAGGATACTGCGAATGTTTTGCATCAGGAATATATTGTGAGGGGTGCAACTGTGTAAATTGTTTTAACAATGTTGAGAATGAAGTGGCAAGACGGGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCAAAAATTGCCAGCAGCCCTCATGGAACACGTAATAGCAGGGATGAGATGGGAGAAGTTTTACTACTGGGAAAGCACAACAAGGGCTGCCACTGTAAAAAATCAGGATGCCTCAAAAAGTACTGTGAATGCTTCCAAGCCAACATTCTTTGCTCTGAAAATTGCAAATGCCTGGACTGCAAAAATTTTGAGGGAAGTGAAGAAAGACAAGCTTTATTCCATGGAGATCAAAATAACAACATAGCGTATATTCAGCAGGCAGCAAATGCTGCAATAACTGGAGCTATTGGATCCTCCGGTTATTCATCCCCTCCAGTATCCAAGAAAAGAAAAGGTCAGGAGCACTTTTTTGGGCCAACAGTCAAGGATCCATCTGTTGGCAGGCTTGGGCAGTTTCAACAGGCAAACAATGTCGGAGTTCCTGCTCCATCCTCTTCCTTGCCTTCTGTCCCTGGTGCTTGGGTTGGAAGTGCTGCAGTAGGTCCTTCAAAATTTGCGTACAGGTCTCTTTTAGCAGACATCATACAACCACAGCACTTGAAGGAACTTTGCTCTGTTCTGGTGCTAGTATCAGGACAAGCTGCGAAGACACTCTCAGGACCAGATCAGAAAAATTTAATGGACCAGCAGCGAATTGAAGATCAGACAGAGACTGCCCTTGCTTCATCAACTCAACAGCAATTGCCTAGCCAAATGGAGACTGACATCGAGAAAACTGTGGCTGATGATTGTTTGAGTGCAAACCAGGCAGATAAAATTGGCCCAGATGATTCCAGTTCAGATGGTGCTGAGATCTCAAAGGGGAGGCCAATGTCTCCTGGAACTCTCGCCTTGATGTGCGATGAGCAAGATGCAATGTTCATGACAGCTCCCTCTCCTAGTGTTTTGATGGCCCACGCCTGCACCACATCTTCATCTTTACAGTCTGCTCCTGGACAAGGCATGACAGAGGCGCATGCAGAGCAAGAAAGGATTGTATTGACAAAGTTCAGAGATTTTCTGAATAGGGTTATCACTATGGGAGAAATAAATGAAACAAAGCATTCTTCATTAGCTAGAAGTGTATTGGAGACTCAAAAGGACCCGGTCAGCAATAATGTTGGAAGTACAAGTACTAAGACAACACAACATCAGGTTGCCACTAGTAATGGTGTTGCCAAAGCTGCAGTCCCACCCATGGCCACAAGTATGAACATATTAACTTCAACAACTTTAATTCCTAATAATATTATTCCTGAAAATGGGGAAAGTAGGCCAAAGATTGAAAAGGAGATATGA 1512 0.4358 MSFSPPISYKFKKPPIFGLFAGKAKPINNQEIGYCECFASGIYCEGCNCVNCFNNVENEVARREAVEATLERNPNAFRPKIASSPHGTRNSRDEMGEVLLLGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCLDCKNFEGSEERQALFHGDQNNNIAYIQQAANAAITGAIGSSGYSSPPVSKKRKGQEHFFGPTVKDPSVGRLGQFQQANNVGVPAPSSSLPSVPGAWVGSAAVGPSKFAYRSLLADIIQPQHLKELCSVLVLVSGQAAKTLSGPDQKNLMDQQRIEDQTETALASSTQQQLPSQMETDIEKTVADDCLSANQADKIGPDDSSSDGAEISKGRPMSPGTLALMCDEQDAMFMTAPSPSVLMAHACTTSSSLQSAPGQGMTEAHAEQERIVLTKFRDFLNRVITMGEINETKHSSLARSVLETQKDPVSNNVGSTSTKTTQHQVATSNGVAKAAVPPMATSMNILTSTTLIPNNIIPENGESRPKIEKEI 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2170 503 SMART CXC_2 29 58 IPR033467 -
Alju01g2170 503 SMART CXC_2 103 144 IPR033467 -
Alju01g2170 503 PANTHER TESMIN/TSO1-RELATED 34 421 IPR028307 -
Alju01g2170 503 MobiDBLite consensus disorder prediction 326 351 - -
Alju01g2170 503 ProSiteProfiles CRC domain profile. 23 143 IPR005172 -
Alju01g2170 503 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 106 140 IPR005172 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2170 Alju-ChrAlju01 18669334 18675347 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2170 34 470 CPP Transcription Factor Family AT4G29000 59.050 6.08e-169 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Alju01g2170 TCR 2.7e-12 No_clan