Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Alju01g2169 ATGGAAGAAGGTGATGGGGGTGATGGCCCTCCGAAGAATGTGTTGTTGGATTCTTCTGCCGTAGCGTTGCCTTTGGATGGTACAGGGAAGAAGCTAGCGAGGCAGCTCGATTTTACGGGTTTTGGTGGGGTATCGGGTACTATGGCTTCAAACCAACATCTGCAGTTGCAACTGCAGCCTCAGTCACTGCCTCAGGGACTGGCACAACAAACCATGGCTGTGATGCCAGTGCCGCCGCAAGTACCTCATACTGCAGTGTGGGTTGGGAAACCAGAATCTCCAAAATCAAGATCAAGACCTAACTTTGAAATGAAAGACTCAACCCCAAAGAAGCAAAAACAGTGCAATTGTAAGCACTCAAGATGCTTAAAGTTGTCGTTGCCTGTAAGTAACGCGCTGTATGGCTCGAGTACAGTGAGAAGTGAGCGAGGGCCGCTGCATCGTCGCCCGGATGTAGTGTTAAATGAGCAAGGGCTACCGCTTTCTTCTGAACGGAGGCGGCTAAAGAAGCTAGTTCATGAAAACAGGATCAGATTTGGCACTTGGAACATTGGGACTTTGAGCGGCAAATCGTGGGAGGTGGTGGGAGTAATGAAGGATCGTAAGATTAATATCCTGTGTCTCCAGGAAACTAAATGGTCAGGAGAAAGGTCTAGAGAAATTAATGGTTTTAAGCTCTGGTACACAGGAAAGGTCAATGGACGGAATGGTGTTGGTATCATTGCTGACAAGGAGTGGAGGAAGAATGTGGTGGACGTTAAGAGGATTGAGGACAGAATTATTTCCTTAAGAATGATTGTTGGAAATGATACTATTAACATTATCAGTGCGTATGCACTTCAAGTAGGGGCAGAAGTACATCTTAAGGAAAAATTCTGGGAAGATTTGGAGGGACTAATTCAGAGTATCCCACTAACTGAAAAGATTTTTATTGGAGGTGATCTTAATGGACATGTTGGTAAGGAGGCAGGACCTCATGCAAGAGCGCATGGTGGTTTTGGATTTGGGTTACTCAATAATGAAGGTCAATCTATTATTGATTTCTCCCTCGCATATGATCTCAAGATTGTCAACACTTGTTTTAAGAAGCGAGAGGAGCATTTAATAACATACAAGAGTGGAGCCGCAAGGTCACAGATCGACTTCTTCTTGGTAAGGAATTCTGATAGACGATTCTGTACTAACTGTAAAGTGATCCCTGAGGATGGCGTGACAGCACAACATAGGGTCCAGCAGGTTGCTAAAGCAATTCTGGGAGAATCAAAAGGTCTTGGTCGGCAAGATAAGGAGACTTGGTGGTGGGATGAGACTGTTCAAGAGAAAACCAAGCATAAGAAAGATTGTTTTAAAGCCATACACTTATGTAATAATGCTGAAAATTGGGAAAAATATCGTATGGCTAAAAAAGAGACTAAAAAGGCAGTGAGTGAAGCTCGTAATAAAGCATATGAAGAGTTTTATAAGGAGTTAGGGACAAAGGCAGGAGAGCGTAAGATTTACAAGATCGCAAAGAACAAGGAGAGAAAATCAAGAGACTTGGACCAAGTGAGGTGTATAAAGGATGAAGAAGGAAAAGTTTTGGTTACTGATGGAGATATTAAGGATAGGTGGGAAGCCTACTTTTATAAGTTGTTTAATGATGGTGGAGAAGGGTCGCATTGTGACTTGGAAGATTTGACAACTCGAGAAGGTGACCTCAATTTTTCATTTTATCGCAGGATTCGAATTGGCGAGGTTAAAGAAGCTCTTAAGAAGATGGAAACTGGTAAAGCTGTCGGACCTGATGGTATTTCAATTGAAGTTTGGAAATGTTTGGGCGAGGAGGGTGTGTCGTGGCTCACAAAATTATTTAATGAGATCTTACGAACCAAGAAAATGCCAGATGAGTGGAGGAAAAGTACTTTGGTTCCTATTTATAAGAATAAAGGGGATATTCAGAATTGCGCAAACTATAGAGGAATTAAGCTAATGAGCCATACAATGAAATTGTGGGAAAAAGTGATTGAATATAGGTTGAGGTTGGAGACTGATGTTGCTGAAAACCAATTTGGATTCATGTCAGGAAGGTCTACAACAGAAGCGATTTATTTATTAAGGGGGATAATGGAAAAGTATAGGAGTAAAGGAAGAGATTTACACATGGTCTTCATTGATTTGGAGAAAGCTTATGACCGGGTGTCAAGAGATGTGCTTTGGAAAGCCTTGGAAAAGAAGGGGGTGAGGATTGCATATATTAAAGCCATTCAAGATATGTATGCGGGGGTTACAACCAATGTTAGAACGTCTGGAGGTGTTACAAAGGACTTCCCTATAAGGATTGGACTACATCAAGGATCAGCTTTAAGTCCTTATTTGTTTAACCTAGTGATAGACGTTCTAATTGAACCTATAAAAGAGGAGATCCCTAAATGTATGCTTTTTGCGGATGATATAGTGTTGTTGGCTGAATCTAGGGAAGAAATTAACTCCAAACTTGAGATATGGAGGCGGACTTTGGAATTGAGAGGTTTTCGTCTTTGTAGGAGCAAAACTGAATATATGCATTGCAAATTTGATAAGAGACAAAGTCAAAGTGAAGTGGAAGTTAAATTGGGTGGGCAAGTCATCCCGCAAGTGACAAAATTTAGATATTTGGGATCAATTATACAACAAGATGGTGAGGTGGATGGAGACGTCAATCACAGAATTCAAGCCGGATGGTATAAATGGAGAAAAGCTACGGGAGTTATTTGTGATCGTAAGGTACCTAATAAGGTAAAAGGAAAATTCTACCGCACTGCTATAAGACCAGCAATGCTATATGGTAGTGAATGTTGGGCTTTAAAGGGATATCATGAACATAAAATGGGGGTAGCTGAGATGAGGATGCTAAGATGGATGTGTGGCCATACAAGAAAGGACAAGATTCGTAACACTCATATACGTGATCGTGTTGGAGTGGCCCCTATTGACGAAAAAATGGTAGAAAATCGTTTGAGATGGTTTGGACATGTTCAGCGAAGGCCATTGAGTGCTCCGGTGAGAAGGGTTGATCAAACAGAATGGAGTCCTGTCAAACGAGGTCGAGGAAGACCGAAACGAACGCTTAATGAGGTCATTGAGAGAGACCTTTTAATTAATAATATATCGAAATCTATGGTTTTTGATAGAGCACAATGGCGTCGTGCGATCCATGTAGCCGACCCCACCTAA 3192 0.4179 MEEGDGGDGPPKNVLLDSSAVALPLDGTGKKLARQLDFTGFGGVSGTMASNQHLQLQLQPQSLPQGLAQQTMAVMPVPPQVPHTAVWVGKPESPKSRSRPNFEMKDSTPKKQKQCNCKHSRCLKLSLPVSNALYGSSTVRSERGPLHRRPDVVLNEQGLPLSSERRRLKKLVHENRIRFGTWNIGTLSGKSWEVVGVMKDRKINILCLQETKWSGERSREINGFKLWYTGKVNGRNGVGIIADKEWRKNVVDVKRIEDRIISLRMIVGNDTINIISAYALQVGAEVHLKEKFWEDLEGLIQSIPLTEKIFIGGDLNGHVGKEAGPHARAHGGFGFGLLNNEGQSIIDFSLAYDLKIVNTCFKKREEHLITYKSGAARSQIDFFLVRNSDRRFCTNCKVIPEDGVTAQHRVQQVAKAILGESKGLGRQDKETWWWDETVQEKTKHKKDCFKAIHLCNNAENWEKYRMAKKETKKAVSEARNKAYEEFYKELGTKAGERKIYKIAKNKERKSRDLDQVRCIKDEEGKVLVTDGDIKDRWEAYFYKLFNDGGEGSHCDLEDLTTREGDLNFSFYRRIRIGEVKEALKKMETGKAVGPDGISIEVWKCLGEEGVSWLTKLFNEILRTKKMPDEWRKSTLVPIYKNKGDIQNCANYRGIKLMSHTMKLWEKVIEYRLRLETDVAENQFGFMSGRSTTEAIYLLRGIMEKYRSKGRDLHMVFIDLEKAYDRVSRDVLWKALEKKGVRIAYIKAIQDMYAGVTTNVRTSGGVTKDFPIRIGLHQGSALSPYLFNLVIDVLIEPIKEEIPKCMLFADDIVLLAESREEINSKLEIWRRTLELRGFRLCRSKTEYMHCKFDKRQSQSEVEVKLGGQVIPQVTKFRYLGSIIQQDGEVDGDVNHRIQAGWYKWRKATGVICDRKVPNKVKGKFYRTAIRPAMLYGSECWALKGYHEHKMGVAEMRMLRWMCGHTRKDKIRNTHIRDRVGVAPIDEKMVENRLRWFGHVQRRPLSAPVRRVDQTEWSPVKRGRGRPKRTLNEVIERDLLINNISKSMVFDRAQWRRAIHVADPT 1063
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Alju01g2169 1063 MobiDBLite consensus disorder prediction 84 113 - -
Alju01g2169 1063 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 643 881 IPR000477 -
Alju01g2169 1063 Gene3D - 676 856 IPR043128 -
Alju01g2169 1063 CDD RT_nLTR_like 632 882 - -
Alju01g2169 1063 PANTHER REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN 652 1054 - -
Alju01g2169 1063 MobiDBLite consensus disorder prediction 96 113 - -
Alju01g2169 1063 SUPERFAMILY DNase I-like 172 401 IPR036691 -
Alju01g2169 1063 ProSiteProfiles Reverse transcriptase (RT) catalytic domain profile. 619 882 IPR000477 -
Alju01g2169 1063 CDD L1-EN 179 400 - -
Alju01g2169 1063 SUPERFAMILY DNA/RNA polymerases 576 849 IPR043502 -
Alju01g2169 1063 Gene3D Endonuclease/exonuclease/phosphatase 171 412 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Alju01g2169 Alju-ChrAlju01 18660926 18665805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Alju01g2169 1 125 CPP Transcription Factor Family AT2G20110 38.732 9.80e-15 76.6